Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g2132 | ATGGAAGATTACCATGTTGCTAAGTTTGTTGAGATTCAAGAACATGAATTGGGGCTCTTTGCTATTTATGATGGCCATTCAGGAGAAAGTGTGCCTGCCTATTTACAAAAGCATTTGTTTTCGAATATCCTGAAGGAGGAAGATTTTTTGGCTGACCCGAACAACGCGATGTCAAAAGCCTATGAGAAGACAGACCAGGCAATTCTATCCCACAGCTCTGATTTGGGTCGTGGTGGATCGACTGCTGTTACTGTTATTCTGATTAATGGCCGACGATTATGGGTGGCTAATGTTGGAGACTCACGTGCAGTTCTTTCGAGAGGGGGTGAAGCTGTGCAGTTGTCCATCGATCATGAGCCGAATACAGAACGCGGCATGATCGAGAATAAAGGTGGCTTTGTTTCAAACATGCCAGGAGATGTACCTCGAGTGAATGGGCAGCTAGCTGTTTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTGCGATCGGATCCTGACACACGTGATGTCACGATAGAAGCCGATATGGACATATTAATTCTCGCCAGCGACGGTCTTTGGAAGGTAATGACCAATCAAGAAGCAGTCGACATTGCTCGAAAAATTAAAGACCCGTTGAAGGCTGCTAAGCAGTTAATAACTGAAGCTTTGCTGAACGAGAGCAAAGATGATATATCATGCATTGTGGTTAGATTTAGGTGA | 708 | 44.63 | MEDYHVAKFVEIQEHELGLFAIYDGHSGESVPAYLQKHLFSNILKEEDFLADPNNAMSKAYEKTDQAILSHSSDLGRGGSTAVTVILINGRRLWVANVGDSRAVLSRGGEAVQLSIDHEPNTERGMIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDTRDVTIEADMDILILASDGLWKVMTNQEAVDIARKIKDPLKAAKQLITEALLNESKDDISCIVVRFR | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 25963283 | 25968885 | + | Sed0028233.3 | Sed13g2132 | 735642 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g2132 | 235 | SMART | PP2C_4 | 1 | 232 | IPR001932 | - | |
| Sed13g2132 | 235 | FunFam | Probable protein phosphatase 2C 39 | 1 | 235 | - | - | |
| Sed13g2132 | 235 | SUPERFAMILY | PP2C-like | 1 | 234 | IPR036457 | - | |
| Sed13g2132 | 235 | SMART | PP2C_SIG_2 | 4 | 234 | IPR001932 | - | |
| Sed13g2132 | 235 | PANTHER | PROTEIN PHOSPHATASE | 1 | 232 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Sed13g2132 | 235 | Pfam | Protein phosphatase 2C | 1 | 227 | IPR001932 | - | |
| Sed13g2132 | 235 | Gene3D | - | 1 | 235 | IPR036457 | - | |
| Sed13g2132 | 235 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 234 | IPR001932 | - | |
| Sed13g2132 | 235 | CDD | PP2Cc | 1 | 234 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed13g2130 | Sed-Chr13:25963283 | Sed13g2132 | Sed-Chr13:25963283 | 5.10E-131 | dispersed | |
| Sed13g2132 | Sed-Chr13:25963283 | Sed14g1623 | Sed-Chr14:24410889 | 9.40E-62 | dispersed | |
| Sed13g2131 | Sed-Chr13:25963283 | Sed13g2132 | Sed-Chr13:25963283 | 4.90E-131 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g2132 | K17506 | - | csv:101213414 | 417.157 |