Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2133 ATGGCGAAAGAGAGAGAGCTGCTCGTTTACTCTGCTAGATTGGCAGAGCAGGCTGAGAGATATGAAGAGATGGTTGAGGAAATGAAGAAAGTTGCAAAGTTAAATGTGGAATTGACGGTGGAAGAGAGAAATCTGCTGTCTGTTGGCTATAAAAATGTAATAGGAGCTAGACGAGCTTCATGGCGCATTTTGTCTTCAATTGAACAGAAAGAGATTTCCAAACATAATGAGAAGAATGTGGAACGGATAATTGTGTACAAGAATCGGGTTGAAGATGAACTCTCTAAAATATGCAGTGACATATTGTCAGTTGTCGACCAGCATCTCCTTCCAAGTTCCACAGCTGGAGAATCTACTGTATTCTACCATAAGATGAAAGGAGATTATTGTCGGTATTTGGCGGAGTTTAAATCTGGTGATGAGAATAAACAAGTTGCTGAGCAGTCATTAAAGGCTTATGAGGCTGCTTCTACCATTGCAAACTCTGATTTGCCTCCAACTCATCCTATTAGACTTGGCTTGGCTCTGAACTTCTCTGTTTTCTACTATGAGATTTTGAACTCCCCTGAAAGGGCTACCCACCTAGCCAAACAAGCCTTTGATGAGGCAATTGCAGAGCTCGACAGTCTCCATGAAGATTCCTACAAGGACAGTACCCTCATTATGCAGCTTCTCAGGGACAATCTAACCCTGTGGACTTCCGATATCCCAGATGAAGGAGAGCAGTCCAATGCTGATGAAGTTTAG 747 42.57 MAKERELLVYSARLAEQAERYEEMVEEMKKVAKLNVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEISKHNEKNVERIIVYKNRVEDELSKICSDILSVVDQHLLPSSTAGESTVFYHKMKGDYCRYLAEFKSGDENKQVAEQSLKAYEAASTIANSDLPPTHPIRLGLALNFSVFYYEILNSPERATHLAKQAFDEAIAELDSLHEDSYKDSTLIMQLLRDNLTLWTSDIPDEGEQSNADEV 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25976695 25980196 - Sed0019688.1 Sed13g2133 735643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2133 248 Gene3D - 1 247 IPR036815 -
Sed13g2133 248 PANTHER 14-3-3 PROTEIN 4 238 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Sed13g2133 248 Pfam 14-3-3 protein 12 233 IPR023410 -
Sed13g2133 248 FunFam 14-3-3 protein epsilon 1 246 - -
Sed13g2133 248 Coils Coil 11 34 - -
Sed13g2133 248 PIRSF 14-3-3 1 247 IPR000308 -
Sed13g2133 248 PRINTS 14-3-3 protein zeta signature 179 205 IPR000308 -
Sed13g2133 248 PRINTS 14-3-3 protein zeta signature 86 110 IPR000308 -
Sed13g2133 248 PRINTS 14-3-3 protein zeta signature 117 139 IPR000308 -
Sed13g2133 248 PRINTS 14-3-3 protein zeta signature 152 178 IPR000308 -
Sed13g2133 248 PRINTS 14-3-3 protein zeta signature 206 235 IPR000308 -
Sed13g2133 248 PRINTS 14-3-3 protein zeta signature 37 66 IPR000308 -
Sed13g2133 248 ProSitePatterns 14-3-3 proteins signature 2. 215 234 IPR023409 -
Sed13g2133 248 SUPERFAMILY 14-3-3 protein 4 235 IPR036815 -
Sed13g2133 248 ProSitePatterns 14-3-3 proteins signature 1. 43 53 IPR023409 -
Sed13g2133 248 SMART 1433_4 5 246 IPR023410 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1991 Sed-Chr7:34846116 Sed13g2133 Sed-Chr13:25976695 5.20E-101 dispersed
Sed07g1992 Sed-Chr7:34846694 Sed13g2133 Sed-Chr13:25976695 5.30E-101 dispersed
Sed13g2133 Sed-Chr13:25976695 Sed13g2141 Sed-Chr13:26046387 9.90E-86 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2133 K06630 - csv:101213169 422.55