Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2138 ATGCAATCGGAAGATTCAAAATCCCCACAATTCCCAAACCCTTCGCCTAATTTCCCACCGCCGACGACGTATCGTCCAACTCCGGCGACCAGAATCCCGGCGGACCACCACTCTACCCAATCCATAATCCTCTCTCCGGCGCCTCACCCTCAACGAGTCGCCGCCGTCTCTCCCCCATACCATTTCCAACCCCCTTCCAAACGAATCCATTCTCCCGACCACATACGCCGCTTCCACGGCTCCGATTCCGGTTCCAACTTCCTCGGTTTCATCGTCGCCCTCTCCGAGTCCACTCGCCGCCGCAAAATCTCCGATCCGTGTCACCAATCCGACGCCGTCAACTCCTTCGTCTCGATTCTTGAAACCCTGATTCAATGGATCGACGAAATACCACCGGCGCAAATGGCGTCTCGGTTTGGAAATCTTTCCTATCGGACTTGGCATTCGCGGATGGCGGAAAACAGCGACTCTCTCATGCTTCGATTTCTCCCTGAAGATCTTCATTCAGCTACCATAGAAATTGTGCCCTATTTCACTGATAGCTTCGGGAATTCGAGCCGAATCGATTACGGGACCGGGCACGAGACCAACTTCGCGGCGTGGTTGTATTGCTTGGCGAAATTGGGGATTGTCAAAGAGGAAGATTACCCTGCTGTGGTGGTTAGGGTTTTTGTGAAGTACCTTGAGTTGATGAGGAAATTGCAGCTGGTGTATTGCTTGGAGCCTGCGGGTTCTCATGGCGTTTGGGGCCTTGATGATTACCATTTCTTGCCGTTCGTTTTCGGGTCGTCGCAGTTGATAGATCATCAGTATCTGAAACCTAAATCCATTCATAGTCAGGATGTATTAGACAGTTATTCGAATGAGTATCTTTACTTGTCGTGTATTTCGTTTATAAAGAAGGTGAAGAAGGGTCCATTTTCAGAGCATTCGCCATTACTTGATGATATTAGTGGGGTGCCTAATTGGAACAAGGTTAATAGTGGGTTGCTTAAGATGTATAAGGTGGAGGTATTAGAGAAAGTTCCCATTATGCAGCATTTCCTCTTTGGATGGCTCATCAAATGGAACTAG 1074 49.16 MQSEDSKSPQFPNPSPNFPPPTTYRPTPATRIPADHHSTQSIILSPAPHPQRVAAVSPPYHFQPPSKRIHSPDHIRRFHGSDSGSNFLGFIVALSESTRRRKISDPCHQSDAVNSFVSILETLIQWIDEIPPAQMASRFGNLSYRTWHSRMAENSDSLMLRFLPEDLHSATIEIVPYFTDSFGNSSRIDYGTGHETNFAAWLYCLAKLGIVKEEDYPAVVVRVFVKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFVFGSSQLIDHQYLKPKSIHSQDVLDSYSNEYLYLSCISFIKKVKKGPFSEHSPLLDDISGVPNWNKVNSGLLKMYKVEVLEKVPIMQHFLFGWLIKWN 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26035969 26038641 + Sed0008659.1 Sed13g2138 735648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2138 357 CDD PTPA 87 351 IPR004327 GO:0019211(InterPro)
Sed13g2138 357 Pfam Phosphotyrosyl phosphate activator (PTPA) protein 65 356 IPR004327 GO:0019211(InterPro)
Sed13g2138 357 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B 59 356 IPR004327 GO:0000159(PANTHER)|GO:0003755(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0007052(PANTHER)|GO:0008160(PANTHER)|GO:0019211(InterPro)
Sed13g2138 357 MobiDBLite consensus disorder prediction 1 33 - -
Sed13g2138 357 SUPERFAMILY PTPA-like 57 356 IPR037218 GO:0019211(InterPro)
Sed13g2138 357 MobiDBLite consensus disorder prediction 12 27 - -
Sed13g2138 357 PIRSF PTPA 53 357 IPR004327 GO:0019211(InterPro)
Sed13g2138 357 Gene3D - 251 357 IPR043170 -
Sed13g2138 357 FunFam Serine/threonine-protein phosphatase 2A activator 251 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2138 K17605 - - mdm:103421372 554.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0151 Sed-Chr4:1037087 Sed13g2138 Sed-Chr13:26035969 9.70E-152 dispersed
Sed13g2138 Sed-Chr13:26035969 Sed04g0150 Sed-Chr4:1036998 2.00E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g434 . . . . . . . . . . . . Car01g01231 . Sed04g0151 . . Bhi04g00772 Tan02g2403 Cmetu03g1910 . Hepe10g0487 . Lcy13g1552 Cla08g01118 Cam08g1574 Cec08g1144 Cco08g1272 Clacu08g1275 . Cre08g1056 . . Cone17ag1209 . Lsi04g02244 Csa03g04454 . Cme03g01856 . . . Bda13g01396 . Bpe14g00459 . Bma02g00136 Sed13g2138 Cmo01g01659 . . . . Car09g00494 . Cpe02g00367 Bhi09g02448 Tan01g3799 Cmetu04g0033 . Hepe01g2136 Mch11g0674 . . . . . . . . Lsi08g00975 Csa02g02159 Chy03g01358 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003204 2 3 1 1 1 1 1 2 2 1 1 2 1 1 2 2 2 2 2 2 2 2 1 2 2 2 2 3 2 1 51