Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2141 ATGGCGGTCACATCTTCCCCACGCGAGGAGTATGTTTACTTGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTTATGGAGAAGCTTTCCGCCGCCGTGGACGACGACGAGCTCACCGTCGAGGAGCGGAACCTTCTCTCCGTTGCCTACAAGAACGTCATCGGAGCGCGTAGAGCCTCCTGGAGGATCATTTCCTCCATCGAGCAGAAGGAGGAGAGCCGAGGGAACGACGATCATGTCTCCGTCATCCGAGATTACAGATCCAAGATCGAGACCGAGCTCTCTAAAATCTGCGATGGAATCCTCAAGCTTCTTGACTCGAGACTTATCTCCTCCGCCGCGTCTGGAGATTCTAAGGTGTTTTATCTCAAAATGAAGGGCGATTACCATAGATACCTGGCTGAGTTCAAGACCGGAGCTGAACGGAAGGAAGCCGCTGAAAGTACTCTCACTGCTTATAAATCTGCTCAGGACATTGCCAATGCTGAACTTGCACCTACTCACCCCATACGTCTTGGGCTGGCTTTGAACTTCTCGGTGTTCTATTATGAGATTCTGAATTCTCCTGATCGAGCTTGCACCCTTGCAAAACAGGCTTTCGATGAAGCAATTGCAGAGTTAGATACACTGGGCGAGGAATCATACAAAGACAGCACTTTGATCATGCAACTTCTTCGTGACAACCTCACCCTATGGACTTCGGACATGCAGGATGATGGAGATGATATCAAAGAAGCAGCTCCCAAACGTGATGAGGAATAG 777 50.84 MAVTSSPREEYVYLAKLAEQAERYEEMVEFMEKLSAAVDDDELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIRDYRSKIETELSKICDGILKLLDSRLISSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGDDIKEAAPKRDEE 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26046387 26050225 + Sed0018538.1 Sed13g2141 735651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2141 258 Pfam 14-3-3 protein 14 238 IPR023410 -
Sed13g2141 258 PIRSF 14-3-3 2 250 IPR000308 -
Sed13g2141 258 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Sed13g2141 258 FunFam 14-3-3 protein epsilon 4 251 - -
Sed13g2141 258 Coils Coil 14 34 - -
Sed13g2141 258 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Sed13g2141 258 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Sed13g2141 258 SMART 1433_4 8 250 IPR023410 -
Sed13g2141 258 PANTHER 14-3-3 PROTEIN 8 243 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Sed13g2141 258 Gene3D - 1 252 IPR036815 -
Sed13g2141 258 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Sed13g2141 258 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Sed13g2141 258 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Sed13g2141 258 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Sed13g2141 258 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Sed13g2141 258 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1432 Sed-Chr3:9082286 Sed13g2141 Sed-Chr13:26046387 1.20E-99 dispersed
Sed04g0227 Sed-Chr4:1648824 Sed13g2141 Sed-Chr13:26046387 9.40E-100 dispersed
Sed06g0910 Sed-Chr6:11278689 Sed13g2141 Sed-Chr13:26046387 1.50E-116 dispersed
Sed06g0911 Sed-Chr6:11278689 Sed13g2141 Sed-Chr13:26046387 6.60E-114 dispersed
Sed10g1197 Sed-Chr10:21811597 Sed13g2141 Sed-Chr13:26046387 2.20E-120 dispersed
Sed13g2133 Sed-Chr13:25976695 Sed13g2141 Sed-Chr13:26046387 9.90E-86 proximal
Sed13g2141 Sed-Chr13:26046387 Sed04g0158 Sed-Chr4:1074549 1.60E-123 wgd
Sed13g2141 Sed-Chr13:26046387 Sed05g1594 Sed-Chr5:29693563 3.00E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2141 K06630 - csv:101210822 487.648