Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2160 ATGGCTCAAACCACGCCCAACCACACGCAGACGGTCTCCGGTTGGGCAGCTCATGATTCTTCCGGCAACATCACTCCATACACTTTCAAACGCAGAGAAAACGGCCCCGACGACGTGACCATTGACATTTTGTACTGTGGAATATGCCATACCGATCTTCACTACGCCAAAAACGAGTGGGGCATCACTATGTACCCTGTCGTTCCCGGGCATGAGATGACAGGGGTGATTTCTAAGGTGGGAAGCAACGTGAAGAAGTTCAAAATTGGGGACAGAGTAGGGGTTGGATGCATAGCCGCTTCGTGTTTGAACTGCGAGTTCTGCAAAGATTCCCAAGAAAATTACTGTGAAAATTTGCAGTTTACATACAATGGAATCTTCTGGGATGGGAGCATCACCTACGGTGGATACTCAAAAATGTTTGTTTCAGATCAGAGGTATGTTGTGCACATACCGGAGAGGCTGGCGATGGACGCGGCGGCCCCGTTGCTGTGTGCTGGGATTACGGTGTTCACGCCCATGAAAGATCTTAATCTGGTCGATTCGCCGAGGAAGAAGGTGGGAGTGGTGGGTCTTGGTGGGCTTGGCCACATAGCAGTTAAATTTGCAAAGGCGTTTGGCCACCATGTCACTGTTATCAGCACCTCTGCTTTTAAGGAGAAAGAGGCTAGAGAGCGCCTTGGCGCTGACCAGTTCATTGTCAGTAAAGATCCTCAGCAAATGCAGAGTTGTAGGAGGACTTTGGATTTTATATTGGACACAGTGTCAGCACAGCATTGCATTGGATCAATATTGGAATTGCTGAAAGTAAATGGGACATTGTCCATTGTTGGAGCCCCAGACAAGCCCATTCAATTGCCCTCTTTCCCTTTAATCTTCGGGAAGAGGACAGTGAAGGGAAGCATAATAGGTGGAATACAAGAAACACAGGAGATGATGGACTTATGTGGTAAATACAACATTACTAGTGATATTGAGGTCATAAAGCCTGAGGACATCAACCATGCTATGGAACGCCTCATCAAAAACGATGTTCGATACCGATTTGTCATTGACATTGCGCATAATAAAGCTAAATATTAA 1083 46.72 MAQTTPNHTQTVSGWAAHDSSGNITPYTFKRRENGPDDVTIDILYCGICHTDLHYAKNEWGITMYPVVPGHEMTGVISKVGSNVKKFKIGDRVGVGCIAASCLNCEFCKDSQENYCENLQFTYNGIFWDGSITYGGYSKMFVSDQRYVVHIPERLAMDAAAPLLCAGITVFTPMKDLNLVDSPRKKVGVVGLGGLGHIAVKFAKAFGHHVTVISTSAFKEKEARERLGADQFIVSKDPQQMQSCRRTLDFILDTVSAQHCIGSILELLKVNGTLSIVGAPDKPIQLPSFPLIFGKRTVKGSIIGGIQETQEMMDLCGKYNITSDIEVIKPEDINHAMERLIKNDVRYRFVIDIAHNKAKY 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26172324 26175313 + Sed0014434.1 Sed13g2160 735670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2160 360 Gene3D - 15 353 - -
Sed13g2160 360 FunFam probable cinnamyl alcohol dehydrogenase 15 179 - -
Sed13g2160 360 PANTHER ALDEHYDE REDUCTASE 7 354 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Sed13g2160 360 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491(InterPro)
Sed13g2160 360 Pfam Alcohol dehydrogenase GroES-like domain 35 153 IPR013154 -
Sed13g2160 360 FunFam Cinnamyl alcohol dehydrogenase 166 323 - -
Sed13g2160 360 Pfam Zinc-binding dehydrogenase 194 316 IPR013149 -
Sed13g2160 360 SUPERFAMILY GroES-like 17 180 IPR011032 -
Sed13g2160 360 Gene3D - 166 323 - -
Sed13g2160 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 321 IPR036291 -
Sed13g2160 360 CDD CAD1 14 352 IPR047109 GO:0016616(InterPro)
Sed13g2160 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0468 Sed-Chr13:3192509 Sed13g2160 Sed-Chr13:26172324 1.60E-92 dispersed
Sed13g2160 Sed-Chr13:26172324 Sed14g1014 Sed-Chr14:19661056 1.70E-99 dispersed
Sed13g2160 Sed-Chr13:26172324 Sed10g0805 Sed-Chr10:5827449 8.90E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2160 K00083 - csv:101213170 666.766