Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2172 ATGGCGACCCAACCGGACGACGAAGTGCAGGCCAATCCTGAGGCGACGACGGTTGCTTCCGCCATTGAAGAAGCCACTTCGCACAATCATGAACTGCCGTTGCTTAACGATGTCGTCCTGCAGATGCCTTCTCACGCCATCAAAGGCCTGCTCTCCATTGGAGTATGTATCCCTTGTATCATTCGCCTATCTGGCATCCAAAGACACAATTATTCCTTTTCACTGGTGGCACCAATCTTAGGTTCTGATAAGAAGTCAGTTGATGATGATAATGATAGAAACACTTGCAGACTATGTTTAGGTATTATGCAGTTCAGTTATACTGACGATAAAGGTAACTTTGTAAAACATAAAGGAGCTGATGATTTAGCTGTCCCAATTTCCGAGATGGTAAAGAAAGAGGGTCATCAAATTGATAGCTTTTCTCTTGAGGTGTCAGTTCCTTCGATCATTCTGGAGAATGAGAAGCTTGTTTGGATGTTTTTGAAAAGAAAATATGGATCTGAAGATTGGTTTCAGGGCAAGCCTCCTCCTATATGTCTTTCAGCAAAGGATGCATTGAAAATATGTATAACAAAGCCTCTCGAAACTTTACTGGATTGCAAATCTAGTTCAAGTGGTTTGCGAATCCGTTTAACTTACAGTCATCCTAAAGCTTCAAATGACAATGATAATTCCATCAAAAGAAAAAACCCAGGCGGCAGCAAGATGAGAAAAGTTGCTGGCAATGATGAACCCTGGGTTATTTCAAACTGCAATTCCAATTTGCTCTCTGATGATTGTTTCAACCCTTCACAAAAAGTTGAACTTCCCAAGTGTTTGGAATTTTCTCTAGAAAAGATCACTGAACCATGCCATTTTGCTCTAACATGTTATCGGACTTCAATATACATGGTTGGCAGATACATTAAGTATTCAAGAAATGTGAGTCAATCAAGGTGGGTAATTGGTGATGAGAGAATGGGAGAAGCATCCGTCGAGGAGATTCTAGGCGACCATATTCTTCCCGTGTGTCGGGGTGATAATTACAAGTTCCATGCTGCTGGTAGAGAAGATCTCGATGTTCGAATGTTGGGTTCAGGTAGACCTTTCCTTGTTGAGATACAGAATGCACGTCTTGTCCCATCAGAGATGATTATAAATGAAATAGAGTCAAAGATAAATAGCTCAGAAAAAAAATTGGTTGGCGTAAGAAATCTGAAAATTGCAGGCAGCGAGGGTTGGGCAGTGGTGCAAGAAGGAGAAGCAGAGAAGCAGAAGCAATATGCTGCACTTGTGTGGACATCTCGCCCGCTTGTGGATGACGATCTATTGTCAATATCATCACTCAAAGACTTGAAAATTTTGCAGAGAACACCAATAAGAGTGCTTCATCGTCGCAGTCCATTAGAACGTGAAAAGATTATCCACTGGATGAAAATTGAGAAGGTTGCTGAAAGTTCTCAGTATTATCTCCTGCATTTGTGTACCCAGGTGTATATTTTTTAA 1488 41.26 MATQPDDEVQANPEATTVASAIEEATSHNHELPLLNDVVLQMPSHAIKGLLSIGVCIPCIIRLSGIQRHNYSFSLVAPILGSDKKSVDDDNDRNTCRLCLGIMQFSYTDDKGNFVKHKGADDLAVPISEMVKKEGHQIDSFSLEVSVPSIILENEKLVWMFLKRKYGSEDWFQGKPPPICLSAKDALKICITKPLETLLDCKSSSSGLRIRLTYSHPKASNDNDNSIKRKNPGGSKMRKVAGNDEPWVISNCNSNLLSDDCFNPSQKVELPKCLEFSLEKITEPCHFALTCYRTSIYMVGRYIKYSRNVSQSRWVIGDERMGEASVEEILGDHILPVCRGDNYKFHAAGREDLDVRMLGSGRPFLVEIQNARLVPSEMIINEIESKINSSEKKLVGVRNLKIAGSEGWAVVQEGEAEKQKQYAALVWTSRPLVDDDLLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQVYIF 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26305202 26318300 - Sed0014892.2 Sed13g2172 735682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2172 495 Gene3D - 420 494 - -
Sed13g2172 495 PANTHER UNCHARACTERIZED 42 491 IPR039894 GO:0009982(PANTHER)|GO:0031119(PANTHER)
Sed13g2172 495 FunFam tRNA pseudouridine synthase Pus10 295 419 - -
Sed13g2172 495 Coils Coil 380 400 - -
Sed13g2172 495 Gene3D - 295 419 - -
Sed13g2172 495 Pfam Pus10, C-terminal 297 491 IPR048741 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2172 K07583 - - csv:101215464 754.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g2171 Sed-Chr13:26305202 Sed13g2172 Sed-Chr13:26305202 9.70E-288 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g140 . . . . Bpe02g00327 . . Bma01g02392 . . . . Car01g01567 . . Cpe06g00039 . . . . . . . . . . . . . . . . . . . Lsi04g01789 Csa04g02680 . . . . Bda11g00954 . . . . . Sed13g2172 . . . . . Car09g00063 . Cpe02g00050 Bhi09g02936 Tan01g5070 Cmetu07g2209 . Hepe01g2317 Mch11g0076 . Cla05g01583 Cam05g1691 Cec05g1694 Cco05g1741 Clacu05g1680 Cmu05g1571 Cre05g1688 . . Chy07g00371 Cme07g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008871 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 2 3 1 1 2 1 1 33