Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2178 ATGGCAGTCCACGGCGGCGACATAGATCCCAGAAGCGGCTTCTCCCCATCCACCAACATCTTCCACAGCAAACGCCCCCCAATCCCACTCCCCCCCAACCCATCCCTGGACGCCACCACCTTCATCTCCTCCCGCCCCCACCACGGCACCATCGCCCTCATCGACGCCGCCACCGGCCGCCACCTCACCTACTCCCACCTCTGGCACTCCGTCCACTCCCTCGCCGCCGCCCTCTCCGACATGGGCATCCGCAAAGGCCACGTCATCCTCCTCCTCTCCCCCAACTCCATCTTCTTCCCCCTCATCTGCCTCTCCGTCATCTCCCTGGGCGCCGTCATCACCACCACCAACCCCCTCAACACCCCCCGAGAAATCGCCAAGCAGATCGCCGATTCAAACCCCGTTTTAGCCTTCACAACCCACCCATTAATCCCCAAGATCGCCAACTCCGGACTGCCCATCGTCCTCATCGACGACGCCAAAACCCCAATCGGGGGCAAAATCGTGTCCACGCTGAGCGAAATGATGAAGAGAAACCCCGGTGGGAGCCGGATGAAGGAGCGGGTGGACCAAAACGACACCGCGACTCTGCTGTACTCCTCTGGGACGACAGGCGCGAGCAAGGGCGTGGTGTCGTCCCACAAGAACATAATTGCGATGGTCCAAATCGTGGTGACCCGCTTCAAATTAACCCAAGGGGAAGGGACCTTCATCTGCACGGTTCCCATGTTTCACATCTACGGCCTTGTGGCTTTCGCTACAGGCCTGCTCTCCTCCGGATCCACCATTGTCGTTCTCTCCAAATTCGAAATTCACGACATGTTGTTGGCCATTGAGAAGTACAGGGCCACGTACCTGCCGCTTGTGCCGCCCATTCTCGTCGCCATGCTCAACGCCGCCGACCAGATCAAGGGGAACTACGACTTGGGGTCGCTGCACACCGCGTTGTCCGGCGGGGCGCCTCTGGGGAAGGAGGTCATTGAGGGGTTTGTTCAGAAGTATCCCAATGTTACCATTCTTCAGGGATACGGCCTGACCGAGTCCACCGGAATTGGGGCGTCCACGGACTCGCTCGAGGAGAGTCGCCGGTACGGCACGGCGGGGCTTCTCTCGCCGACCACCCAGGGGATGATTGTCGACCCGGAATCCGGCGAGCCTCTGCCTGTGAACCGGACCGGGGAACTTTGGCTCAGAGGGCCCACCATCATGAAAGGGTATTTTGGTAATGTGGAGGCCACAACCTCAACACTTGACTCAAATGGATGGCTGAGAACGGGTGATCTGTGTTATATTGATGAAGATGGTTTTATTTTTGTGGTTGATAGACTTAAGGAGCTCATCAAATATAAGGGTTATCAGGTGCCTCCTGCAGAATTAGAGGCGCTGCTACTCACACATCCTAATATTTCTGATGCAGCTGTGATTCCATTTCCAGACAAGGAGGTAGGGCAGTATCCGATGGCTTACGTGGTAAGGAAGGGTGGAAGTAACATTTCACAAGAAGATGTAATGCAATTCGTGGCAAAACAGGTGGCACCGTACAAGAAAATTCGGCGAGTGGCGTTCGTGGATTCCATTCCGAAGAACCCGTCCGGTAAGATTCTGAGAAAGGATCTCATAAAGCTCGCAACCTCCAAACTCTGA 1644 56.51 MAVHGGDIDPRSGFSPSTNIFHSKRPPIPLPPNPSLDATTFISSRPHHGTIALIDAATGRHLTYSHLWHSVHSLAAALSDMGIRKGHVILLLSPNSIFFPLICLSVISLGAVITTTNPLNTPREIAKQIADSNPVLAFTTHPLIPKIANSGLPIVLIDDAKTPIGGKIVSTLSEMMKRNPGGSRMKERVDQNDTATLLYSSGTTGASKGVVSSHKNIIAMVQIVVTRFKLTQGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHDMLLAIEKYRATYLPLVPPILVAMLNAADQIKGNYDLGSLHTALSGGAPLGKEVIEGFVQKYPNVTILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPTTQGMIVDPESGEPLPVNRTGELWLRGPTIMKGYFGNVEATTSTLDSNGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPNISDAAVIPFPDKEVGQYPMAYVVRKGGSNISQEDVMQFVAKQVAPYKKIRRVAFVDSIPKNPSGKILRKDLIKLATSKL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26382796 26388542 - Sed0018589.1 Sed13g2178 735688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2178 547 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Sed13g2178 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 22 444 - -
Sed13g2178 547 SUPERFAMILY Acetyl-CoA synthetase-like 45 545 - -
Sed13g2178 547 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Sed13g2178 547 Pfam AMP-binding enzyme 47 407 IPR000873 -
Sed13g2178 547 CDD 4CL 35 539 - -
Sed13g2178 547 FunFam 4-coumarate--CoA ligase 2 445 546 - -
Sed13g2178 547 Gene3D - 445 546 IPR045851 -
Sed13g2178 547 Gene3D - 18 444 IPR042099 -
Sed13g2178 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 539 - GO:0005777(PANTHER)|GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0243 Sed-Chr5:1441098 Sed13g2178 Sed-Chr13:26382796 1.70E-105 dispersed
Sed05g0244 Sed-Chr5:1441100 Sed13g2178 Sed-Chr13:26382796 2.70E-128 dispersed
Sed06g2012 Sed-Chr6:44240688 Sed13g2178 Sed-Chr13:26382796 2.80E-128 dispersed
Sed08g2452 Sed-Chr8:37492296 Sed13g2178 Sed-Chr13:26382796 3.50E-131 dispersed
Sed11g1313 Sed-Chr11:28858233 Sed13g2178 Sed-Chr13:26382796 9.30E-121 dispersed
Sed12g2223 Sed-Chr12:32627305 Sed13g2178 Sed-Chr13:26382796 2.20E-98 dispersed
Sed13g2178 Sed-Chr13:26382796 Sed01g1599 Sed-Chr1:11619951 7.40E-134 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2178 K10526 - csv:101221396 929.472