Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2199 ATGGGCGATGTTGCCAAATCGGCGATGAAGAAGAGGAAGAAAAAGGGCCGTCCTTCTCTCTTAGATCTCCAAAAGCGCTTCCTCAAACACCAAAAGTTGCAGGAACAACAACCCCTAGTCCCTCTCCACTTCCCCTCAAACCCTAGGACTTCCTCATCTCGCCGGAATCGCAACGTTCGCCCGCCGGTTGAGTGCGTTCACGCCGGCGACGACGACGACGAGCGCATCCAGAAGAAGCATAAGCCCTTACTCGGTTTAACTTCTTCCCAAAACTATCCAACACTGCCCGCTTATTCTTTCGGCGAAGACTCCGAGGCGGCCCTCAAACGCCGCAGAATCCACGCCGCCCAGTTCCCATCTTATCAACGGAGTGAAAAAGCTTCGAAAGTGACAGACATTGCGCATGAGTCGCAGGTGGAGTCTGGTCCCACGACCACTTTGCCAGACAAAAAGTTATTGATTTTCATCCTCGATAGGCTCCAAAAAAAAGACACACATGAAGTATTCTCAGAACCCGTGGATCCAAACGAGCTTCCTGATTACCATGCCATTATTGAGAATCCTATGGATTTTGGGACTGTGAGGGCGAAATTAGATGGAGGAGCTTACGCAAATTTGGAACAGTTTGAGGAAGACATTTTTTTGATATGTTCAAATGCAAAGAAGTATAACGCTTCAGATACTGTTTTCTTCCGTCAGGCACGATCCATACAAGAACTTGCGAAGAAGGATTTTGAGAATTTGAGGCGAGAAAGCAGTGATGAAAGTGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACAGAAAGTTGTGAGAAGGGGTAGGCCACCAGGAAAGAGCCAGAAGAAATCTATAGGTCTTGGTAACCCTATTGAAAGCACTAGTGCAGATTTTTGCTCTGGTGCTGCTGCGCTTGCTTCTGGATGCGATGATTCCAACAACGTCAATGGGTACAATTTGAGAAGAGCACGCTCTTCCTTTACGGCTCTGTCTGCAGATCCTTTAGTTAGGACATCAACAGCAGCTCAACATGGCGAAACTTTGGCTAGCTGGTTGCCTGGATGGAGAAATGAATTTCCAGCTTCAGTTTTGAAGGGTGTTCTTAGAAGTGGAAAGAATGATACTATGGCTGTGGATGAGAATAGACGCGAGACCTATAATCATTCACTGTCCCGTGGGAATTGGCCATCTGCCTTTGGAAACCTTGGTGGAGACTTGAAGCAACTAATTGCTGTAGGGTTGCATGCTGACCTTGGTTATATAAGAAGCCTAGCTCTCTTTGCAGCCGATCTAGGTCCTGTAGTTTGGAAGATTGTTTCTAAGAAAATTGATAGTATTAGTCGGGAACTGAGTCAATTATTTATGCAAGAAATTGAAGTACTAAAACAGCAGCGCATGTTCCATATGAATGGAAGCTCATTTGTCACAAAAACAGCAGCGGAGAGCACAGGCATTCTTCCATGTAGTACCATATCTGGATGTAACATTGGTATTTCAAATCATTTTCAGAAACAAGGAGAAGATGCTGAAATTGACAGAGAGAGAAGCTCCCAAAGTGAGACAGTGCTAGACGGAAGTAGAAGTGTGATAGGATCTACAACTTGTATACTAAACGAGCAGAAAACTAATGTTGATTTTCCCCCCCATGTTTCACTAGATATGAAAATGGTAAGACTTGATGCCATTATTGGTGGGATGCCTTGTTCAAACGACTCTTCTGTGTCTTGTCGAATGCACTGTTCATCTCCAGCTCTCAACAATGCTTCTGTACAAAGCCAAGCTGAAATGCCAAAACTTGCAGAAAATGGCTCTCAGTCACATGCACTCTTGCATTATTCACTGTCTCGTGCCTACTTTCAGGAGCCGATTGAAACGAAACAAGAGCAGGGGCTTGGTGAAAAAGCTCGTTGGCAAGAATTGTCGACTCATCCTGTGCTAGATTCACTCGCCTTCAATCCTGACCTTCATTTTGGATTAGGCTCATCTGCTACACCCAGTTCTACCCTGCAGATTCTTTCACAAATCCAACCCGATTTAGTATTGCAGCTTTGA 2082 45.29 MGDVAKSAMKKRKKKGRPSLLDLQKRFLKHQKLQEQQPLVPLHFPSNPRTSSSRRNRNVRPPVECVHAGDDDDERIQKKHKPLLGLTSSQNYPTLPAYSFGEDSEAALKRRRIHAAQFPSYQRSEKASKVTDIAHESQVESGPTTTLPDKKLLIFILDRLQKKDTHEVFSEPVDPNELPDYHAIIENPMDFGTVRAKLDGGAYANLEQFEEDIFLICSNAKKYNASDTVFFRQARSIQELAKKDFENLRRESSDESEPEPEPEPEPEPEPEPEPEPEQKVVRRGRPPGKSQKKSIGLGNPIESTSADFCSGAAALASGCDDSNNVNGYNLRRARSSFTALSADPLVRTSTAAQHGETLASWLPGWRNEFPASVLKGVLRSGKNDTMAVDENRRETYNHSLSRGNWPSAFGNLGGDLKQLIAVGLHADLGYIRSLALFAADLGPVVWKIVSKKIDSISRELSQLFMQEIEVLKQQRMFHMNGSSFVTKTAAESTGILPCSTISGCNIGISNHFQKQGEDAEIDRERSSQSETVLDGSRSVIGSTTCILNEQKTNVDFPPHVSLDMKMVRLDAIIGGMPCSNDSSVSCRMHCSSPALNNASVQSQAEMPKLAENGSQSHALLHYSLSRAYFQEPIETKQEQGLGEKARWQELSTHPVLDSLAFNPDLHFGLGSSATPSSTLQILSQIQPDLVLQL 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26504061 26508181 - Sed0017255.1 Sed13g2199 735709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2199 693 ProSitePatterns Bromodomain signature. 166 223 IPR018359 -
Sed13g2199 693 Pfam Bromodomain 156 235 IPR001487 GO:0005515(InterPro)
Sed13g2199 693 PRINTS Bromodomain signature 178 194 IPR001487 GO:0005515(InterPro)
Sed13g2199 693 PRINTS Bromodomain signature 212 231 IPR001487 GO:0005515(InterPro)
Sed13g2199 693 PRINTS Bromodomain signature 164 177 IPR001487 GO:0005515(InterPro)
Sed13g2199 693 PRINTS Bromodomain signature 194 212 IPR001487 GO:0005515(InterPro)
Sed13g2199 693 Gene3D - 145 261 IPR036427 GO:0005515(InterPro)
Sed13g2199 693 MobiDBLite consensus disorder prediction 1 69 - -
Sed13g2199 693 MobiDBLite consensus disorder prediction 40 58 - -
Sed13g2199 693 SMART bromo_6 142 250 IPR001487 GO:0005515(InterPro)
Sed13g2199 693 MobiDBLite consensus disorder prediction 245 300 - -
Sed13g2199 693 SUPERFAMILY Bromodomain 139 251 IPR036427 GO:0005515(InterPro)
Sed13g2199 693 MobiDBLite consensus disorder prediction 257 272 - -
Sed13g2199 693 ProSiteProfiles Bromodomain profile. 161 231 IPR001487 GO:0005515(InterPro)
Sed13g2199 693 CDD Bromodomain 149 245 - -
Sed13g2199 693 PANTHER BROMODOMAIN CONTAINING PROTEIN 9 692 IPR051831 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2199 K22184 - - csv:101217603 831.247
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3790 Sed-Chr4:46459881 Sed13g2199 Sed-Chr13:26504061 1.30E-62 dispersed
Sed14g1704 Sed-Chr14:24892992 Sed13g2199 Sed-Chr13:26504061 9.10E-06 dispersed
Sed13g2199 Sed-Chr13:26504061 Sed05g2164 Sed-Chr5:34565250 2.50E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g88 . . . Bda03g00322 . Bpe04g00283 Bma04g00289 . . . Cma01g02019 . Car01g01587 . . . . . . . . . . . . . . . . . . Cone4ag2023 Cone7ag1940 . . Lsi04g01811 Csa04g02708 . . . . . . . . . . Sed13g2199 Cmo01g02077 . . . . . . Cpe02g00031 Bhi09g02875 Tan01g5115 Cmetu07g1520 . Hepe01g2345 Mch11g0053 . Cla11g01827 Cam11g1894 Cec11g1919 Cco11g1927 Clacu11g2058 Cmu11g1863 Cre11g2270 . . Chy07g00397 Cme07g00050
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011763 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 26