Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2203 ATGGTACTTGCAGAAGTAGAGGGTAAGGTCGTGAAATCCAAGCCCAATCGGAGTTATGAGCTCACGAAGAATCTCAAAGTGTATCCGATCGGTGGGATTCAAGTGGAATTCCCGTATCGGCCGTATGGCTCACAGCTCGCATTCATGGGCAGAGTCATATCCACCCTTGATCGAGCCCATCGAGAGGGCCACTGCCACGCATTGCTCGAGTCTCCCACCGGAACCGGCAAGTCCCTCTCGCTTCTCTGCTCGGCTCTCGCTTGGCAGAAGACCTATAAGATCAAGAATCAGGAACATAATAACCCCGCTCCGGAGGCTGCCACAGATCCTCTCGCCTTTGGTGGTGGATTTATTCCCCAACTTCAGCCCTCAATGTCCGTAGATACGGAGTCATCTCTTCCAGTGCCAAACAACAAAAGTCAAAAGAAAAAGACCACCCCAACCATATACTATGCTTCGAGGACACATTCACAGATATCGCAAGTGATTCGTGAGTATAGGAAAACTACCTACCGAGTGCCAATGGCCGTGTTGGCATCAAGGAAACATTTCTGCACAAATCCTTACGTACGGGGAAAAGATAATCTTGATGAGGAATGCAAACTACTATTGAAGGATCAAGTTGCAGGATGCTGTGAATTTAAAAACTCAAACAAGGTTAAAAGTCATCCAACTCTTCAGAAAGGAGGATGTCACGAGGTTCATGACATTGAAGATTTGGTGAAAGTTGGGGAAGTTGTAAAAGGTTGTTCATATTACGCAGCTCGTTCTATGGCAGACGATGCACAACTGGTGTTTTGCCCATATAGCTATATTATCAATCCAGTTGTTCGTGGAGCAATGGATGTAGATATTAAGGGTGCCATTGTGATCCTTGATGAAGCCCACAATATTGAGGATATTTCCCGTAGTGCCGGTAGTGTTGACGTTGAAGAGGATACTTTAAATAAATTGCGGATTGAGTTAGAGCAACTATGTCATGTCGATTCTCTGGTTTACCAGCCACTACATGAAATGACGCAGGATCTCATAAGTTGGATTGATCAGAGAAAGACCACACTGCAGAAGCGTGAGTTTCAGCATTATGTCACCTGTTGGACTGGCGTTCCAGCTCAAAGGGAGCTCGAAGAAGCTAATATATCTCAGCAGTGCTTCCCAATTTTGCTTGAATGTGCAACGAAGGCAATTAAAGCAGCTACAGATACGGAGTCTGATACTGCACATTTGAGTGGCCTATCAGTTATAACGCTGGAAGGGCTGTTCTCTTCACTGACATATTTTTTCTCAAGAAATGGTTGCCACATGTCTGATTACCAGCTTGTATTGCAACGCTATGTTAAAAGAGATCCTGGAAAAGCAAATGTTGATTGGGTACATACTTTAAGTTTGTGGTGCTTGAATCCAGCTGTTGTATTTAGAGACATTGCCAATCTTTCCTTATCAGTTATCTTGACATCTGGGACCCTGTCTCCTATGAATTCATTTTCATCTGAACTAGGAATTCAATTTGGAACTTCACTAGAAGCTCCTCACGTAATTGACGTGGAATCTCAGGTGTGGCCAGCTGTTATATCAACCGGCCCAGGAAACTATCCACTTAATGGAAGTTATAAAACAGCCGATGGATATGCATTTCAGGATGCATTAGGAAAATCTTTGGAAGAGATATTTTTTATCACTCCTGGTGGCTGTCTTGTGTTCTTCCCTAGTTATAAGTTGATGGAGAAACTCCAAAATCGTTGGTCCGAAACTGGTCAGTGGTCTCGATTGAATGCAAAGAAGTCTCTTTTTGTTGAGCCAAGAGGAGGAACTCAAGAGGATTTTGACTCCATTTTGAAAGGTTATTATGATACTATACGTCTTGGCGATAACTTTGCAGTCGGGAAGAAGAGGCGAGGGAAGAAGGTTAAACCCAATCACCCATATGTGACTAGCTGTGAAAATCCCAAGGAAGGTGCAGCATTCTTTGCAGTTTTTCGAGGAAAGGTTTCAGAAGGAATAGACTTTTCTGATGATAATGCTAGAGTGGTTATAATAGTTGGTATTCCATTTCCAAATATAAATGATATTCAAGTTGCATTAAAGAAAAAGTTCAATGACACATATAAAATGTCCAAAAACCTTTTAAGTGGAAATGAGTGGTATTGTCAACAGGCCTTCCGAGCTCTAAATCAAGCTGCAGGACGTTGTATTCGACACAAGTTTGACTATGGTGCCATTGTCCTATTAGATGAGCGTTTCCAGGAAGAGAGGAACAGAACCTACATTTCAAAGTGGCTAAGAAAATCCATTAGACAATTCAATAACTTCGAACAGTCTATGGCGGGGTTGAAATCCTTTTTCAGCCACATTAAGCTTCATTTCAGGAGCGCATTAGCAAGAGTACAGAAAGCGGACTTTCAGAAATCTGAAAATGTGGAAAACATCATTTCTACGGATCCTAGTAGTTTTAGAAGAAAGAAGATAGAAAATTTTGACAAGTTAGATTATTGTGGGCAGAAAGTTCACGAGGATCCTAAAAACTGTATAATTGATCTAGAATGCAGTGCAGAAACAGATATGAGGAACCATGAGTTTCTATCTATGATGACAACCGTTCTTGAAGTTCCAGATTCACCAATTCTGCACGAGACTCCTTGTGTTGATGTTGGAGGAGTCACTAGTCTAAGAGACTCAAAATATGAAAGGTCGACTTCAACCTTGATTGAGGTCAATTCTGAGTATCATGATCAACTATCTAATCATTCATTACCTTTAACCAAATCAACAAGATCTCCTCTTACATCCGAAATCTCAATGCTACATACTCCTGAAAGAAATGTTGCTGCAAATGCTTACAGCTTTGCACCCGAAACAGAATCTTCGTTGAATATGAGTGTAAATTCTCATACCCAGAAAAGGAGGAAGTCTCTGGGTTTAACCATTACGAAACTCGCTCAAGAAGAGTTTGCTGCTGATCCCAAAACCAAAACTCCTGAATGCAACAGCGTGGACAGAAGCTCAATCAGCAGAAATTCAAATAGCCCAAAAGGTAGTTCTGAGATTATTTTCACAGAAAAAAAGTCGAAGAGTTCAAATGTTCACCAAGTGCTCAAGCTAAATGATACTGTTCCTGTTTTTCCATCTTCCGGCTCTCCAATGGAGAAAAAGTTGCATCTGTCTTGTGCACTTTGTAAAAGCCCATTGGGTCGACCGGAGAACCATTTATATGTCACGTGCTCATATACAGTATCATCAAAATCACACTTAATGTCGATATATAAGGAAAGGTTGAAACCTCAAACAGCCAATTCACCAACAAGTGTACCAGTTATTATGGCAGACATTTTGTTTGTTGACCAGAGGCTCCTAGATAGGTCTTCAAAAGATACAAGACGTGGTATCTGGAGCGAGGAGGACGGTTGTGTATTCAATTGTGTATTTTGCCCCTTCTGTCGTACTGACAATTGTATTGGCCTACAGATCATGGCGACTGATGCATTAAACATGCCGTTACTTAATAAGGTGATGTTTTACTTTGAGTGTTTGGATATCCAAGGATTAAAAGCGCATACAGAAAAGGCTTCGATAAACAAGGAGTTCTTACCCGTTAGTAGCTCAGTTAAGAATAAGATTGTCGTGATGGAACCCATTGAAAAGTTTTCATACTCGCCTAGCCCGCAAACCTCAGGAGGCTGGAGGTCTACAAAATTTAAAGTCAGAAGGAAAGAAAGTTCATAG 3720 41.51 MVLAEVEGKVVKSKPNRSYELTKNLKVYPIGGIQVEFPYRPYGSQLAFMGRVISTLDRAHREGHCHALLESPTGTGKSLSLLCSALAWQKTYKIKNQEHNNPAPEAATDPLAFGGGFIPQLQPSMSVDTESSLPVPNNKSQKKKTTPTIYYASRTHSQISQVIREYRKTTYRVPMAVLASRKHFCTNPYVRGKDNLDEECKLLLKDQVAGCCEFKNSNKVKSHPTLQKGGCHEVHDIEDLVKVGEVVKGCSYYAARSMADDAQLVFCPYSYIINPVVRGAMDVDIKGAIVILDEAHNIEDISRSAGSVDVEEDTLNKLRIELEQLCHVDSLVYQPLHEMTQDLISWIDQRKTTLQKREFQHYVTCWTGVPAQRELEEANISQQCFPILLECATKAIKAATDTESDTAHLSGLSVITLEGLFSSLTYFFSRNGCHMSDYQLVLQRYVKRDPGKANVDWVHTLSLWCLNPAVVFRDIANLSLSVILTSGTLSPMNSFSSELGIQFGTSLEAPHVIDVESQVWPAVISTGPGNYPLNGSYKTADGYAFQDALGKSLEEIFFITPGGCLVFFPSYKLMEKLQNRWSETGQWSRLNAKKSLFVEPRGGTQEDFDSILKGYYDTIRLGDNFAVGKKRRGKKVKPNHPYVTSCENPKEGAAFFAVFRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVALKKKFNDTYKMSKNLLSGNEWYCQQAFRALNQAAGRCIRHKFDYGAIVLLDERFQEERNRTYISKWLRKSIRQFNNFEQSMAGLKSFFSHIKLHFRSALARVQKADFQKSENVENIISTDPSSFRRKKIENFDKLDYCGQKVHEDPKNCIIDLECSAETDMRNHEFLSMMTTVLEVPDSPILHETPCVDVGGVTSLRDSKYERSTSTLIEVNSEYHDQLSNHSLPLTKSTRSPLTSEISMLHTPERNVAANAYSFAPETESSLNMSVNSHTQKRRKSLGLTITKLAQEEFAADPKTKTPECNSVDRSSISRNSNSPKGSSEIIFTEKKSKSSNVHQVLKLNDTVPVFPSSGSPMEKKLHLSCALCKSPLGRPENHLYVTCSYTVSSKSHLMSIYKERLKPQTANSPTSVPVIMADILFVDQRLLDRSSKDTRRGIWSEEDGCVFNCVFCPFCRTDNCIGLQIMATDALNMPLLNKVMFYFECLDIQGLKAHTEKASINKEFLPVSSSVKNKIVVMEPIEKFSYSPSPQTSGGWRSTKFKVRRKESS 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26529407 26547739 - Sed0022111.1 Sed13g2203 735713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2203 1239 MobiDBLite consensus disorder prediction 126 146 - -
Sed13g2203 1239 Pfam DEAD_2 151 315 IPR010614 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)
Sed13g2203 1239 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 30 805 IPR045028 GO:0003678(PANTHER)|GO:0005634(PANTHER)|GO:0006289(PANTHER)|GO:1990918(PANTHER)
Sed13g2203 1239 CDD SF2_C_XPD 517 747 - -
Sed13g2203 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 743 IPR027417 -
Sed13g2203 1239 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 31 343 IPR014013 GO:0005524(InterPro)
Sed13g2203 1239 Gene3D - 530 776 IPR027417 -
Sed13g2203 1239 SMART Cxpdneu3 571 749 IPR006555 GO:0003676(InterPro)|GO:0004386(InterPro)|GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0016818(InterPro)
Sed13g2203 1239 Gene3D - 39 353 IPR027417 -
Sed13g2203 1239 SMART deadxpd 33 332 IPR006554 GO:0003678(InterPro)|GO:0016818(InterPro)
Sed13g2203 1239 MobiDBLite consensus disorder prediction 994 1013 - -
Sed13g2203 1239 MobiDBLite consensus disorder prediction 984 1013 - -
Sed13g2203 1239 Pfam Helicase C-terminal domain 554 762 IPR006555 GO:0003676(InterPro)|GO:0004386(InterPro)|GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0016818(InterPro)
Sed13g2203 1239 MobiDBLite consensus disorder prediction 1216 1239 - -
Sed13g2203 1239 FunFam Fanconi anemia group J protein homolog 530 775 - -
Sed13g2203 1239 FunFam Fanconi anemia group J protein-like isoform E 132 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2203 K15362 - - csv:101217839 2035.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1487 Sed-Chr7:11635077 Sed13g2203 Sed-Chr13:26529407 2.40E-96 dispersed
Sed07g1488 Sed-Chr7:11635077 Sed13g2203 Sed-Chr13:26529407 2.40E-96 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007710 1 2 1 1 1 0 1 0 0 2 1 1 1 2 2 1 0 1 1 1 2 1 1 2 1 1 1 1 1 1 32