Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2205 ATGGCTACGGGTATTGATTTTTCTCCTCCCTTTGCCCTACTAGAAGGGGCCGGATACAATAAGGACAATGTATCAACCACAAGCGACGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGACCACTGGAAAACCTCCCCGGCATCTCTCGGCTATGCGGCATAGTGTGAGCTCCTTAAAGCTGCTAGGCCAAGCTGATTTAATCTTGGATGCTGATACTCTTGGGGTTAAATCGCCTGATGGGAGAGCAGGATTCTTACCTATCTTCAGATCTGGTAGCTGTTCAGAAAGGGGACCTAAACAGTATATGGAAGATGAGCATATATGCATAGATGATCTTGTTGAACACATCCATGCATGTGCAGACTTCAATTCTACTGGAGCTTTCTATGGGGTTTTTGATGGCCATGGGGGTACAGATGCAGCGGGTTTTGTTAGAAATAACATCCTCAGATTCATAGTCGAGGATTCCCATTTTCCAATTAGTGTAGAGAAGGCAATTAAGAGTGCTTTTTTGAAAGCTGATTATGCATTTGCTGATGCCGATTCTCTGGATATCTCCTCTGGCACAACTGCCCTAACTGCTTTCATTTTGGGAAGAACAATGATTATTGCAAATGCGGGAGATTGTCGAGCAGTTCTGGGGAGGAGGGGCAAGGCCATTGAGGTGTCAACGGATCACAAACCCAACTGTGCATCTGAAAAACTCAGAATTGAGAAGCTGGGGGGAGTGATTTATGACGGGTACCTCAACGGGCAGTTATCTGTTGCACGTGCTATAGGAGACTGGCACATGAAAGGTGCCAAAGGATCTGCATGCCCACTGAGTGCAGAGCCAGAGTTGAAGGAACTGCATCTGACGGAGGAAGATGAATTTCTAATAATGGGCTGCGATGGCCTTTGGGATGTGATGAGCAGTCAGTATGCTGTTACAAGGGCAAGGAAAGAGCTTATGCTACATAATGATCCTGAAAGATGTTCACGAGAGCTGGTAAGAGAGGCACTAAAGCGCAATACATGTGATAATTTAACCGTGATCGTAATCTGTTTTTCGGCTGATCCTCCCCCTCGGATTGAAATTCCTCAAACTCGAGTAAGGAGAAGCATATCGTTAGAAGGGCTGAATATGTTGAAGGGTGTACTGGACTGCAATTCATGA 1161 45.22 MATGIDFSPPFALLEGAGYNKDNVSTTSDESSDSFNSLKQMTTGKPPRHLSAMRHSVSSLKLLGQADLILDADTLGVKSPDGRAGFLPIFRSGSCSERGPKQYMEDEHICIDDLVEHIHACADFNSTGAFYGVFDGHGGTDAAGFVRNNILRFIVEDSHFPISVEKAIKSAFLKADYAFADADSLDISSGTTALTAFILGRTMIIANAGDCRAVLGRRGKAIEVSTDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELKELHLTEEDEFLIMGCDGLWDVMSSQYAVTRARKELMLHNDPERCSRELVREALKRNTCDNLTVIVICFSADPPPRIEIPQTRVRRSISLEGLNMLKGVLDCNS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26558900 26562790 - Sed0013532.1 Sed13g2205 735715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2205 386 SMART PP2C_4 81 349 IPR001932 -
Sed13g2205 386 Pfam Protein phosphatase 2C 92 343 IPR001932 -
Sed13g2205 386 SUPERFAMILY PP2C-like 85 352 IPR036457 -
Sed13g2205 386 SMART PP2C_SIG_2 106 351 IPR001932 -
Sed13g2205 386 Gene3D - 83 354 IPR036457 -
Sed13g2205 386 ProSiteProfiles PPM-type phosphatase domain profile. 91 351 IPR001932 -
Sed13g2205 386 MobiDBLite consensus disorder prediction 24 50 - -
Sed13g2205 386 FunFam Probable protein phosphatase 2C 22 77 354 - -
Sed13g2205 386 PANTHER PROTEIN PHOSPHATASE 2C 56 351 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed13g2205 386 CDD PP2Cc 90 351 IPR001932 -
Sed13g2205 386 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169(InterPro)
Sed13g2205 386 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2419 Sed-Chr1:18074297 Sed13g2205 Sed-Chr13:26558900 3.50E-13 dispersed
Sed01g2420 Sed-Chr1:18074297 Sed13g2205 Sed-Chr13:26558900 1.60E-28 dispersed
Sed08g1554 Sed-Chr8:30623432 Sed13g2205 Sed-Chr13:26558900 1.80E-86 dispersed
Sed09g1325 Sed-Chr9:37401446 Sed13g2205 Sed-Chr13:26558900 7.70E-85 dispersed
Sed11g0178 Sed-Chr11:1590520 Sed13g2205 Sed-Chr13:26558900 4.70E-87 dispersed
Sed13g1733 Sed-Chr13:22324029 Sed13g2205 Sed-Chr13:26558900 7.30E-12 dispersed
Sed13g1955 Sed-Chr13:24458326 Sed13g2205 Sed-Chr13:26558900 6.00E-31 dispersed
Sed13g1956 Sed-Chr13:24458326 Sed13g2205 Sed-Chr13:26558900 1.10E-25 dispersed
Sed13g2205 Sed-Chr13:26558900 Sed08g1784 Sed-Chr8:32608837 2.80E-26 dispersed
Sed01g2418 Sed-Chr1:18074297 Sed13g2205 Sed-Chr13:26558900 4.50E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2205 K14803 - csv:101205355 722.62