Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2206 ATGAGTTTTATTTGGCTTCTTTTGTTGTTATCGCTCTATTGTGGTATTGGGTTTGGTAACAACATATCTTCAAGGCCACCGGTTGTGAACATTGGAGCTATTTTCTCTTATGACTCTACCATTGGTAAAGTTGCCAAGATTGCCATTGAACAAGCTGTAAAAGATGTGAATGCGGATCCCACCGTTCTTCCCGGAACCCAGCTTTGGGTACAAATGCAAAATTCAAACTGTAGTGGATTTTTGGGCATGGTAGAAGTTTTGCAACTTATGGAGAATAAAACCGTTGCCATTATAGGCCCCCAATCTTCTGTAGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTTCCTCTAGTCTCATTTTCGGCTACAGATCCTACTCTCTCCGCCCTTCAGTTTCCTTTCTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAAATGACTGCTATCGCTGAAATTATTGAATATTATGATTGGAAAGAGGTTATTGCTATATATGTCGATGATGATTATGGGTGGAATGGTATTGCAACATTGGGTGATAAGCTTGCCCAAAGGCGGTGTAAAATCACATATAAGGTGGGCATTAGTCCAGAATCTGTGGTAAATCGAGCCCAAGTAATGGATCAACTTGTTAAGGTTGAACCATTGGAAACAAGGGTTATAGTTCTCCATGTGAACCCTAAATTAGGTGCTTTAGTCTTTTCAGTTGCTAAATACCTTCAAATGATGGGCAATGGATATGTATGGATAACAACTGATTGGCTTTCGTCTGTACTAGATAGTGTTGTTCCTTTCCCTCTTGAGACCATAGAGTTGATGCAAGGAATTCTTTCTTTACGCCAGCACACAGCAGACTCAGATAAAAAGAAAACTTTTTTGTCCAGGTGGAATAAGTTAACCAGTGGCTCTTTGGGTCTGAATGCTTATGGTCTATATGCTTATGACTCTGTTTGGGTTGTTGCTCGTGCCATCGACAAATTTTTTAATCAAGGTGGAGTCATTACACATTCTAGTGATTCCAGGTTGCGTTTCAGTGAAAGTGGCGATCTTCATTTAGAAGCTATGACTATCTTTGATGGTGGAAATCGTCTGCTGAATTACATATTGGAGAGTGACTTTATTGGTTTGACTGGTGCCATTAAGTTCGATTCTGATAGATCCCTTGTTCATCCTGCATATGATATTGTTAATGTTATCGGGACTGGATCAAGAAGGGTTGGTTACTGGTCCAACTATTCTGGTCTATCAATTGATGCTCCTGAGATACTTTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTACGAGGTTATATGGCCTGGAAATACAATAGTAAAGCCCCGAGGATGGGTATTCCCGAACAATGGGAAGCAGCTAAACATTGGAGTGCCTCTTCGGGTCAGTTACAAGGAGTTTGTATCACAAATCAAAGGGACCGAAAATTTCCAAGGTTTCTGCATTGACGTGTTCACAGCTGCTGTAGCCTTATTACCTTATGCTGTCTCGCACCGATTTACAGCCTTTGGAGATGGCATTAAGAATCCAAATTACACAGATCTTGTGTATGGGATTACAACTGGCAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGTACAAAGCTTGTGGATTTTACTCTGCCATATACTGCTTCTGGACTAGCTGTTGTGGCCCCATTCAAAAAACTGAACACTGGTGCCTGGGCTTTCATGCATCCGTTTTCTCCAGCCATGTGGATGGTCACTGCCAGTTTCTTCCTTTTTATCGGAATAGTTGTCTGGATTCTGGAGCATCGGACAAATGATGAATTCCGAGGCCCACCTAGAAGACAATGTATTACAATTTTGTGGTTTAGCTTCTCGACTCTATTTTTTGCCCATAAGGAGAACACAATTAGCACTCTTGGCCGCCTTGTACTGATCATATGGCTGTTTGTGGTTTTGATAGTAAATTCTAGCTATACTGCCAGTTTAACGTCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGAGGAAAGGCAATGAACCGATAGGTTTCCAAGTTGGATCTTTTGCTGAACGTTATCTGAGTGAGGAGCTCAACATATCTCGCTCTAGGCTTATTGCTCTTGGATCACCGGAAGAATATACCAAGGCACTTGAGCTTGGCCCTGACAAGGAGGGAGGTGTTGCTGCTATAGTTGATGAACATCTATATATAGAAAGTTTCCTCTCAAGACAGTGTACATTCAGAGTTGTTGGTCAAGAGTTTACGAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGACTCTCCATTGGCTATAGATTTGTCGACTGCGATTTTGCAGCTATCTGAGAATGGCGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCAGCTTGGACAGTACTGAGCTAGAATCAGACCGGCTTGAACTTCAGAGCTTCTGGGGCCTCTTTCTGATCTGTGGGATAGTGTGCTTCATTGCCCTTGCCATATTCTGTTTTCAGATTATTCGTCAGTTATACCATTCTGGTTCAAAAGAATCTGATCTGTCTAGCAATAGTGGATCACAGTCCAACCGTCTTCGACGAATTATATCGGTGTTGGATGAGAAGAAAGAACCAAGGGAAAGCAAACGAAGGAAAGTGGAGAAATCATCTGAAAATGATAAGAACGATGATAACTTGGAGGTAGATCCTTGA 2742 42.09 MSFIWLLLLLSLYCGIGFGNNISSRPPVVNIGAIFSYDSTIGKVAKIAIEQAVKDVNADPTVLPGTQLWVQMQNSNCSGFLGMVEVLQLMENKTVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAIAEIIEYYDWKEVIAIYVDDDYGWNGIATLGDKLAQRRCKITYKVGISPESVVNRAQVMDQLVKVEPLETRVIVLHVNPKLGALVFSVAKYLQMMGNGYVWITTDWLSSVLDSVVPFPLETIELMQGILSLRQHTADSDKKKTFLSRWNKLTSGSLGLNAYGLYAYDSVWVVARAIDKFFNQGGVITHSSDSRLRFSESGDLHLEAMTIFDGGNRLLNYILESDFIGLTGAIKFDSDRSLVHPAYDIVNVIGTGSRRVGYWSNYSGLSIDAPEILYSKPPNRSHANQKLYEVIWPGNTIVKPRGWVFPNNGKQLNIGVPLRVSYKEFVSQIKGTENFQGFCIDVFTAAVALLPYAVSHRFTAFGDGIKNPNYTDLVYGITTGKFDAVVGDIAIVTSRTKLVDFTLPYTASGLAVVAPFKKLNTGAWAFMHPFSPAMWMVTASFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIETLRKGNEPIGFQVGSFAERYLSEELNISRSRLIALGSPEEYTKALELGPDKEGGVAAIVDEHLYIESFLSRQCTFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACSLDSTELESDRLELQSFWGLFLICGIVCFIALAIFCFQIIRQLYHSGSKESDLSSNSGSQSNRLRRIISVLDEKKEPRESKRRKVEKSSENDKNDDNLEVDP 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26573312 26578480 + Sed0011414.1 Sed13g2206 735716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2206 913 FunFam Glutamate receptor 702 810 - -
Sed13g2206 913 FunFam Glutamate receptor 144 300 - -
Sed13g2206 913 SUPERFAMILY Periplasmic binding protein-like II 443 808 - -
Sed13g2206 913 CDD GluR_Plant 463 806 - -
Sed13g2206 913 CDD PBP1_GABAb_receptor_plant 30 419 IPR044440 -
Sed13g2206 913 SUPERFAMILY Periplasmic binding protein-like I 24 457 IPR028082 -
Sed13g2206 913 MobiDBLite consensus disorder prediction 859 913 - -
Sed13g2206 913 FunFam Glutamate receptor 460 576 - -
Sed13g2206 913 PIRSF IGluLR_plant 1 912 IPR017103 -
Sed13g2206 913 FunFam Glutamate receptor 576 706 - -
Sed13g2206 913 Pfam Bacterial extracellular solute-binding proteins, family 3 475 585 IPR001638 -
Sed13g2206 913 MobiDBLite consensus disorder prediction 878 906 - -
Sed13g2206 913 Gene3D - 575 708 - -
Sed13g2206 913 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 885 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Sed13g2206 913 Pfam Receptor family ligand binding region 46 403 IPR001828 -
Sed13g2206 913 MobiDBLite consensus disorder prediction 859 877 - -
Sed13g2206 913 Gene3D - 772 805 - -
Sed13g2206 913 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 42 58 - -
Sed13g2206 913 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 102 130 - -
Sed13g2206 913 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 316 328 - -
Sed13g2206 913 SMART GluR_14 464 808 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed13g2206 913 Gene3D - 47 393 - -
Sed13g2206 913 Gene3D - 470 574 - -
Sed13g2206 913 Gene3D - 144 418 - -
Sed13g2206 913 Pfam Ligand-gated ion channel 807 838 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed13g2206 913 Gene3D - 736 771 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2417 Sed-Chr1:18063391 Sed13g2206 Sed-Chr13:26573312 0.00E+00 dispersed
Sed05g0895 Sed-Chr5:7163067 Sed13g2206 Sed-Chr13:26573312 1.60E-282 dispersed
Sed05g0896 Sed-Chr5:7163067 Sed13g2206 Sed-Chr13:26573312 1.80E-195 dispersed
Sed05g2019 Sed-Chr5:33395646 Sed13g2206 Sed-Chr13:26573312 5.40E-223 dispersed
Sed12g2235 Sed-Chr12:32759010 Sed13g2206 Sed-Chr13:26573312 6.30E-84 dispersed
Sed12g2237 Sed-Chr12:32792868 Sed13g2206 Sed-Chr13:26573312 3.10E-100 dispersed
Sed13g2206 Sed-Chr13:26573312 Sed13g2207 Sed-Chr13:26573312 0.00E+00 tandem
Sed10g0515 Sed-Chr10:3349165 Sed13g2206 Sed-Chr13:26573312 3.1e-310 transposed
Sed01g2416 Sed-Chr1:18063391 Sed13g2206 Sed-Chr13:26573312 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2206 K05387 - csv:101204862 1595.48