Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g2207 | ATGAGTTTTATTTGGCTTCTTTTGTTGTTATCGCTCTATTGTGGTATTGGGTTTGGTAACAACATATCTTCAAGGCCACCGGTTGTGAACATTGGAGCTATTTTCTCTTATGACTCTACCATTGGTAAAGTTGCCAAGATTGCCATTGAACAAGCTGTAAAAGATGTGAATGCGGATCCCACCGTTCTTCCCGGAACCCAGCTTTGGGTACAAATGCAAAATTCAAACTGTAGTGGATTTTTGGGCATGGTAGAAGGTAACCCCCCCTTTCTTTTTTTTTTCTTTTTCTTTCTCCTCCCTGTTTTTACCCCACTTTATTGCTTTAGTTTTCTAATGTTCTTTTGTGTGTTGACAAAGAGTTTTCTTCTGATCCCAACCTCTAGTACTAACGATGAATTTGCTGTAGTTTTGCAACTTATGGAGAATAAAACCGTTGCCATTATAGGCCCCCAATCTTCTGTAGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTTCCTCTAGTCTCATTTTCGGCTACAGATCCTACTCTCTCCGCCCTTCAGTTTCCTTTCTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAAATGACTGCTATCGCTGAAATTATTGAATATTATGATTGGAAAGAGGTTATTGCTATATATGTCGATGATGATTATGGGTGGAATGGTATTGCAACATTGGGTGATAAGCTTGCCCAAAGGCGGTGTAAAATCACATATAAGGTGGGCATTAGTCCAGAATCTGTGGTAAATCGAGCCCAAGTAATGGATCAACTTGTTAAGGTTGAACCATTGGAAACAAGGGTTATAGTTCTCCATGTGAACCCTAAATTAGGTGCTTTAGTCTTTTCAGTTGCTAAATACCTTCAAATGATGGGCAATGGATATGTATGGATAACAACTGATTGGCTTTCGTCTGTACTAGATAGTGTTGTTCCTTTCCCTCTTGAGACCATAGAGTTGATGCAAGGAATTCTTTCTTTACGCCAGCACACAGCAGACTCAGATAAAAAGAAAACTTTTTTGTCCAGGTGGAATAAGTTAACCAGTGGCTCTTTGGGTCTGAATGCTTATGGTCTATATGCTTATGACTCTGTTTGGGTTGTTGCTCGTGCCATCGACAAATTTTTTAATCAAGGTGGAGTCATTACACATTCTAGTGATTCCAGGTTGCGTTTCAGTGAAAGTGGCGATCTTCATTTAGAAGCTATGACTATCTTTGATGGTGGAAATCGTCTGCTGAATTACATATTGGAGAGTGACTTTATTGGTTTGACTGGTGCCATTAAGTTCGATTCTGATAGATCCCTTGTTCATCCTGCATATGATATTGTTAATGTTATCGGGACTGGATCAAGAAGGGTTGGTTACTGGTCCAACTATTCTGGTCTATCAATTGATGCTCCTGAGATACTTTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTACGAGGTTATATGGCCTGGAAATACAATAGTAAAGCCCCGAGGATGGGTATTCCCGAACAATGGGAAGCAGCTAAACATTGGAGTGCCTCTTCGGGTCAGTTACAAGGAGTTTGTATCACAAATCAAAGGGACCGAAAATTTCCAAGGTTTCTGCATTGACGTGTTCACAGCTGCTGTAGCCTTATTACCTTATGCTGTCTCGCACCGATTTACAGCCTTTGGAGATGGCATTAAGAATCCAAATTACACAGATCTTGTGTATGGGATTACAACTGGCAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGTACAAAGCTTGTGGATTTTACTCTGCCATATACTGCTTCTGGACTAGCTGTTGTGGCCCCATTCAAAAAACTGAACACTGGTGCCTGGGCTTTCATGCATCCGTTTTCTCCAGCCATGTGGATGGTCACTGCCAGTTTCTTCCTTTTTATCGGAATAGTTGTCTGGATTCTGGAGCATCGGACAAATGATGAATTCCGAGGCCCACCTAGAAGACAATGTATTACAATTTTGTGGTTTAGCTTCTCGACTCTATTTTTTGCCCATAAGGAGAACACAATTAGCACTCTTGGCCGCCTTGTACTGATCATATGGCTGTTTGTGGTTTTGATAGTAAATTCTAGCTATACTGCCAGTTTAACGTCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGAGGAAAGGCAATGAACCGATAGGTTTCCAAGTTGGATCTTTTGCTGAACGTTATCTGAGTGAGGAGCTCAACATATCTCGCTCTAGGCTTATTGCTCTTGGATCACCGGAAGAATATACCAAGGCACTTGAGCTTGGCCCTGACAAGGAGGGAGGTGTTGCTGCTATAGTTGATGAACATCTATATATAGAAAGTTTCCTCTCAAGACAGTGTACATTCAGAGTTGTTGGTCAAGAGTTTACGAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGACTCTCCATTGGCTATAGATTTGTCGACTGCGATTTTGCAGCTATCTGAGAATGGCGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCAGCTTGGACAGTACTGAGCTAGAATCAGACCGGCTTGAACTTCAGAGCTTCTGGGGCCTCTTTCTGATCTGTGGGATAGTGTGCTTCATTGCCCTTGCCATATTCTGTTTTCAGATTATTCGTCAGTTATACCATTCTGGTTCAAAAGAATCTGATCTGTCTAGCAATAGTGGATCACAGTCCAACCGTCTTCGACGAATTATATCGGTGTTGGATGAGAAGAAAGAACCAAGGGAAAGCAAACGAAGGAAAGTGGAGAAATCATCTGAAAATGATAAGAACGATGATAACTTGGAGGTAGATCCTTGA | 2892 | 41.77 | MSFIWLLLLLSLYCGIGFGNNISSRPPVVNIGAIFSYDSTIGKVAKIAIEQAVKDVNADPTVLPGTQLWVQMQNSNCSGFLGMVEGNPPFLFFFFFFLLPVFTPLYCFSFLMFFCVLTKSFLLIPTSSTNDEFAVVLQLMENKTVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAIAEIIEYYDWKEVIAIYVDDDYGWNGIATLGDKLAQRRCKITYKVGISPESVVNRAQVMDQLVKVEPLETRVIVLHVNPKLGALVFSVAKYLQMMGNGYVWITTDWLSSVLDSVVPFPLETIELMQGILSLRQHTADSDKKKTFLSRWNKLTSGSLGLNAYGLYAYDSVWVVARAIDKFFNQGGVITHSSDSRLRFSESGDLHLEAMTIFDGGNRLLNYILESDFIGLTGAIKFDSDRSLVHPAYDIVNVIGTGSRRVGYWSNYSGLSIDAPEILYSKPPNRSHANQKLYEVIWPGNTIVKPRGWVFPNNGKQLNIGVPLRVSYKEFVSQIKGTENFQGFCIDVFTAAVALLPYAVSHRFTAFGDGIKNPNYTDLVYGITTGKFDAVVGDIAIVTSRTKLVDFTLPYTASGLAVVAPFKKLNTGAWAFMHPFSPAMWMVTASFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIETLRKGNEPIGFQVGSFAERYLSEELNISRSRLIALGSPEEYTKALELGPDKEGGVAAIVDEHLYIESFLSRQCTFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACSLDSTELESDRLELQSFWGLFLICGIVCFIALAIFCFQIIRQLYHSGSKESDLSSNSGSQSNRLRRIISVLDEKKEPRESKRRKVEKSSENDKNDDNLEVDP | 963 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 26573312 | 26578480 | + | Sed0011414.2 | Sed13g2207 | 735717 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g2207 | 963 | MobiDBLite | consensus disorder prediction | 909 | 963 | - | - | |
Sed13g2207 | 963 | Gene3D | - | 128 | 443 | - | - | |
Sed13g2207 | 963 | Pfam | Ligand-gated ion channel | 857 | 888 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Sed13g2207 | 963 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 29 | 934 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Sed13g2207 | 963 | FunFam | Glutamate receptor | 194 | 350 | - | - | |
Sed13g2207 | 963 | Gene3D | - | 520 | 624 | - | - | |
Sed13g2207 | 963 | SUPERFAMILY | Periplasmic binding protein-like II | 493 | 858 | - | - | |
Sed13g2207 | 963 | MobiDBLite | consensus disorder prediction | 928 | 956 | - | - | |
Sed13g2207 | 963 | FunFam | Glutamate receptor | 510 | 626 | - | - | |
Sed13g2207 | 963 | Gene3D | - | 819 | 855 | - | - | |
Sed13g2207 | 963 | Gene3D | - | 194 | 468 | - | - | |
Sed13g2207 | 963 | FunFam | Glutamate receptor | 626 | 756 | - | - | |
Sed13g2207 | 963 | PIRSF | IGluLR_plant | 118 | 962 | IPR017103 | - | |
Sed13g2207 | 963 | PIRSF | IGluLR_plant | 1 | 86 | IPR017103 | - | |
Sed13g2207 | 963 | Gene3D | - | 625 | 758 | - | - | |
Sed13g2207 | 963 | CDD | GluR_Plant | 513 | 856 | - | - | |
Sed13g2207 | 963 | SMART | GluR_14 | 514 | 858 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Sed13g2207 | 963 | MobiDBLite | consensus disorder prediction | 909 | 927 | - | - | |
Sed13g2207 | 963 | CDD | PBP1_GABAb_receptor_plant | 30 | 469 | IPR044440 | - | |
Sed13g2207 | 963 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 525 | 635 | IPR001638 | - | |
Sed13g2207 | 963 | Gene3D | - | 789 | 818 | - | - | |
Sed13g2207 | 963 | FunFam | Glutamate receptor | 752 | 860 | - | - | |
Sed13g2207 | 963 | Pfam | Receptor family ligand binding region | 134 | 453 | IPR001828 | - | |
Sed13g2207 | 963 | SUPERFAMILY | Periplasmic binding protein-like I | 24 | 507 | IPR028082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2416 | Sed-Chr1:18063391 | Sed13g2207 | Sed-Chr13:26573312 | 0.00E+00 | dispersed | |
Sed10g0515 | Sed-Chr10:3349165 | Sed13g2207 | Sed-Chr13:26573312 | 2.20E-303 | dispersed | |
Sed13g2206 | Sed-Chr13:26573312 | Sed13g2207 | Sed-Chr13:26573312 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g2207 | K05387 | - | csv:101204862 | 1571.99 |