Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2207 ATGAGTTTTATTTGGCTTCTTTTGTTGTTATCGCTCTATTGTGGTATTGGGTTTGGTAACAACATATCTTCAAGGCCACCGGTTGTGAACATTGGAGCTATTTTCTCTTATGACTCTACCATTGGTAAAGTTGCCAAGATTGCCATTGAACAAGCTGTAAAAGATGTGAATGCGGATCCCACCGTTCTTCCCGGAACCCAGCTTTGGGTACAAATGCAAAATTCAAACTGTAGTGGATTTTTGGGCATGGTAGAAGGTAACCCCCCCTTTCTTTTTTTTTTCTTTTTCTTTCTCCTCCCTGTTTTTACCCCACTTTATTGCTTTAGTTTTCTAATGTTCTTTTGTGTGTTGACAAAGAGTTTTCTTCTGATCCCAACCTCTAGTACTAACGATGAATTTGCTGTAGTTTTGCAACTTATGGAGAATAAAACCGTTGCCATTATAGGCCCCCAATCTTCTGTAGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTTCCTCTAGTCTCATTTTCGGCTACAGATCCTACTCTCTCCGCCCTTCAGTTTCCTTTCTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAAATGACTGCTATCGCTGAAATTATTGAATATTATGATTGGAAAGAGGTTATTGCTATATATGTCGATGATGATTATGGGTGGAATGGTATTGCAACATTGGGTGATAAGCTTGCCCAAAGGCGGTGTAAAATCACATATAAGGTGGGCATTAGTCCAGAATCTGTGGTAAATCGAGCCCAAGTAATGGATCAACTTGTTAAGGTTGAACCATTGGAAACAAGGGTTATAGTTCTCCATGTGAACCCTAAATTAGGTGCTTTAGTCTTTTCAGTTGCTAAATACCTTCAAATGATGGGCAATGGATATGTATGGATAACAACTGATTGGCTTTCGTCTGTACTAGATAGTGTTGTTCCTTTCCCTCTTGAGACCATAGAGTTGATGCAAGGAATTCTTTCTTTACGCCAGCACACAGCAGACTCAGATAAAAAGAAAACTTTTTTGTCCAGGTGGAATAAGTTAACCAGTGGCTCTTTGGGTCTGAATGCTTATGGTCTATATGCTTATGACTCTGTTTGGGTTGTTGCTCGTGCCATCGACAAATTTTTTAATCAAGGTGGAGTCATTACACATTCTAGTGATTCCAGGTTGCGTTTCAGTGAAAGTGGCGATCTTCATTTAGAAGCTATGACTATCTTTGATGGTGGAAATCGTCTGCTGAATTACATATTGGAGAGTGACTTTATTGGTTTGACTGGTGCCATTAAGTTCGATTCTGATAGATCCCTTGTTCATCCTGCATATGATATTGTTAATGTTATCGGGACTGGATCAAGAAGGGTTGGTTACTGGTCCAACTATTCTGGTCTATCAATTGATGCTCCTGAGATACTTTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTACGAGGTTATATGGCCTGGAAATACAATAGTAAAGCCCCGAGGATGGGTATTCCCGAACAATGGGAAGCAGCTAAACATTGGAGTGCCTCTTCGGGTCAGTTACAAGGAGTTTGTATCACAAATCAAAGGGACCGAAAATTTCCAAGGTTTCTGCATTGACGTGTTCACAGCTGCTGTAGCCTTATTACCTTATGCTGTCTCGCACCGATTTACAGCCTTTGGAGATGGCATTAAGAATCCAAATTACACAGATCTTGTGTATGGGATTACAACTGGCAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGTACAAAGCTTGTGGATTTTACTCTGCCATATACTGCTTCTGGACTAGCTGTTGTGGCCCCATTCAAAAAACTGAACACTGGTGCCTGGGCTTTCATGCATCCGTTTTCTCCAGCCATGTGGATGGTCACTGCCAGTTTCTTCCTTTTTATCGGAATAGTTGTCTGGATTCTGGAGCATCGGACAAATGATGAATTCCGAGGCCCACCTAGAAGACAATGTATTACAATTTTGTGGTTTAGCTTCTCGACTCTATTTTTTGCCCATAAGGAGAACACAATTAGCACTCTTGGCCGCCTTGTACTGATCATATGGCTGTTTGTGGTTTTGATAGTAAATTCTAGCTATACTGCCAGTTTAACGTCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGAGGAAAGGCAATGAACCGATAGGTTTCCAAGTTGGATCTTTTGCTGAACGTTATCTGAGTGAGGAGCTCAACATATCTCGCTCTAGGCTTATTGCTCTTGGATCACCGGAAGAATATACCAAGGCACTTGAGCTTGGCCCTGACAAGGAGGGAGGTGTTGCTGCTATAGTTGATGAACATCTATATATAGAAAGTTTCCTCTCAAGACAGTGTACATTCAGAGTTGTTGGTCAAGAGTTTACGAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGACTCTCCATTGGCTATAGATTTGTCGACTGCGATTTTGCAGCTATCTGAGAATGGCGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCAGCTTGGACAGTACTGAGCTAGAATCAGACCGGCTTGAACTTCAGAGCTTCTGGGGCCTCTTTCTGATCTGTGGGATAGTGTGCTTCATTGCCCTTGCCATATTCTGTTTTCAGATTATTCGTCAGTTATACCATTCTGGTTCAAAAGAATCTGATCTGTCTAGCAATAGTGGATCACAGTCCAACCGTCTTCGACGAATTATATCGGTGTTGGATGAGAAGAAAGAACCAAGGGAAAGCAAACGAAGGAAAGTGGAGAAATCATCTGAAAATGATAAGAACGATGATAACTTGGAGGTAGATCCTTGA 2892 41.77 MSFIWLLLLLSLYCGIGFGNNISSRPPVVNIGAIFSYDSTIGKVAKIAIEQAVKDVNADPTVLPGTQLWVQMQNSNCSGFLGMVEGNPPFLFFFFFFLLPVFTPLYCFSFLMFFCVLTKSFLLIPTSSTNDEFAVVLQLMENKTVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAIAEIIEYYDWKEVIAIYVDDDYGWNGIATLGDKLAQRRCKITYKVGISPESVVNRAQVMDQLVKVEPLETRVIVLHVNPKLGALVFSVAKYLQMMGNGYVWITTDWLSSVLDSVVPFPLETIELMQGILSLRQHTADSDKKKTFLSRWNKLTSGSLGLNAYGLYAYDSVWVVARAIDKFFNQGGVITHSSDSRLRFSESGDLHLEAMTIFDGGNRLLNYILESDFIGLTGAIKFDSDRSLVHPAYDIVNVIGTGSRRVGYWSNYSGLSIDAPEILYSKPPNRSHANQKLYEVIWPGNTIVKPRGWVFPNNGKQLNIGVPLRVSYKEFVSQIKGTENFQGFCIDVFTAAVALLPYAVSHRFTAFGDGIKNPNYTDLVYGITTGKFDAVVGDIAIVTSRTKLVDFTLPYTASGLAVVAPFKKLNTGAWAFMHPFSPAMWMVTASFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIETLRKGNEPIGFQVGSFAERYLSEELNISRSRLIALGSPEEYTKALELGPDKEGGVAAIVDEHLYIESFLSRQCTFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACSLDSTELESDRLELQSFWGLFLICGIVCFIALAIFCFQIIRQLYHSGSKESDLSSNSGSQSNRLRRIISVLDEKKEPRESKRRKVEKSSENDKNDDNLEVDP 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26573312 26578480 + Sed0011414.2 Sed13g2207 735717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2207 963 MobiDBLite consensus disorder prediction 909 963 - -
Sed13g2207 963 Gene3D - 128 443 - -
Sed13g2207 963 Pfam Ligand-gated ion channel 857 888 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed13g2207 963 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 934 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Sed13g2207 963 FunFam Glutamate receptor 194 350 - -
Sed13g2207 963 Gene3D - 520 624 - -
Sed13g2207 963 SUPERFAMILY Periplasmic binding protein-like II 493 858 - -
Sed13g2207 963 MobiDBLite consensus disorder prediction 928 956 - -
Sed13g2207 963 FunFam Glutamate receptor 510 626 - -
Sed13g2207 963 Gene3D - 819 855 - -
Sed13g2207 963 Gene3D - 194 468 - -
Sed13g2207 963 FunFam Glutamate receptor 626 756 - -
Sed13g2207 963 PIRSF IGluLR_plant 118 962 IPR017103 -
Sed13g2207 963 PIRSF IGluLR_plant 1 86 IPR017103 -
Sed13g2207 963 Gene3D - 625 758 - -
Sed13g2207 963 CDD GluR_Plant 513 856 - -
Sed13g2207 963 SMART GluR_14 514 858 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed13g2207 963 MobiDBLite consensus disorder prediction 909 927 - -
Sed13g2207 963 CDD PBP1_GABAb_receptor_plant 30 469 IPR044440 -
Sed13g2207 963 Pfam Bacterial extracellular solute-binding proteins, family 3 525 635 IPR001638 -
Sed13g2207 963 Gene3D - 789 818 - -
Sed13g2207 963 FunFam Glutamate receptor 752 860 - -
Sed13g2207 963 Pfam Receptor family ligand binding region 134 453 IPR001828 -
Sed13g2207 963 SUPERFAMILY Periplasmic binding protein-like I 24 507 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2416 Sed-Chr1:18063391 Sed13g2207 Sed-Chr13:26573312 0.00E+00 dispersed
Sed10g0515 Sed-Chr10:3349165 Sed13g2207 Sed-Chr13:26573312 2.20E-303 dispersed
Sed13g2206 Sed-Chr13:26573312 Sed13g2207 Sed-Chr13:26573312 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2207 K05387 - csv:101204862 1571.99