Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0016 ATGGGTATGGTTTCCGAGTCCCAATTCCATGTTCTTGCTGTTGATGACAGCATCATCGATCGCAAACTGATCGAGCGCCTCCTTAAAACCTCCTCTTATCAAGTTACTACCGTTGATTCTGGGAGTAAAGCTTTGGAGTTCTTGGGTTATGACCCTGCAAATAACTCCATTCCTTCTGTTTCTTCTAACCATCTTCATCATCATCCACAGGATGTGGATGTCAATCTTGTTATTACTGATTACTGCATGCCTGGAATGACTGGCTATGATTTGTTGAAGACAATCAAGGGGTCTAAAGCTTTGAGAAACATTCCGGTTGTGATTATGTCATCTGAGAATGTACCTGCAAGAATCAATAGATGTTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCAGACTTACAGATGTCAACAGGCTTAAACCCCACATGTTGAAAACCAAAGTCAATTGTGACAAACCAGAAAGAACAGAAATAGATAAGCCTGATTCTGGAAGCCAATCTCAAGCACTAGAGCAGCTTCAACAACAACAGCAATATGAACATGAACATGGACAAGAACAATTACAACCCCAACTGCAACAGGTCCCGACGCCGCCGCAAGATCAAGATCGATTACAATCAGTACCATTGTTACCAACCCTGCAACAGGAGCAAGAACAGTTGCAATTACTCCCACCAACACCACCGCAACATTCGAACAACAACAAGAGGAAGGCTATGGAAGATGGACTTTCACCGGATAGAACAAGGCCTAGATACAATGGAGCAAAGCCTCTGATCAAATTGAGTGGATGTATCGGAAAAATGTTGATGGAAAAGATGAATTTTCTCTCACAATGGATAATTTTGATGATGGATTGTTTATCGACAGCCAATTTCTTCGGCCTTATCAATGGAAAACCGAGGAGCTTATTCCTTCCCTAA 933 41.91 MGMVSESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPANNSIPSVSSNHLHHHPQDVDVNLVITDYCMPGMTGYDLLKTIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLTDVNRLKPHMLKTKVNCDKPERTEIDKPDSGSQSQALEQLQQQQQYEHEHGQEQLQPQLQQVPTPPQDQDRLQSVPLLPTLQQEQEQLQLLPPTPPQHSNNNKRKAMEDGLSPDRTRPRYNGAKPLIKLSGCIGKMLMEKMNFLSQWIILMMDCLSTANFFGLINGKPRSLFLP 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 229095 231915 - Sed0009154.3 Sed14g0016 735734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0016 310 Gene3D - 10 250 - -
Sed14g0016 310 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 226 IPR045279 GO:0009736(InterPro)
Sed14g0016 310 MobiDBLite consensus disorder prediction 227 255 - -
Sed14g0016 310 CDD REC_typeA_ARR 11 142 - -
Sed14g0016 310 Pfam Response regulator receiver domain 71 138 IPR001789 GO:0000160(InterPro)
Sed14g0016 310 MobiDBLite consensus disorder prediction 165 208 - -
Sed14g0016 310 MobiDBLite consensus disorder prediction 150 164 - -
Sed14g0016 310 MobiDBLite consensus disorder prediction 150 208 - -
Sed14g0016 310 ProSiteProfiles Response regulatory domain profile. 10 147 IPR001789 GO:0000160(InterPro)
Sed14g0016 310 SMART REC_2 9 146 IPR001789 GO:0000160(InterPro)
Sed14g0016 310 SUPERFAMILY CheY-like 8 143 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0819 Sed-Chr2:45861278 Sed14g0016 Sed-Chr14:229095 4.30E-56 dispersed
Sed03g0778 Sed-Chr3:4680177 Sed14g0016 Sed-Chr14:229095 1.00E-44 dispersed
Sed04g2967 Sed-Chr4:41094912 Sed14g0016 Sed-Chr14:229095 4.00E-39 dispersed
Sed11g1542 Sed-Chr11:31030429 Sed14g0016 Sed-Chr14:229095 3.60E-51 dispersed
Sed12g1909 Sed-Chr12:30226674 Sed14g0016 Sed-Chr14:229095 7.50E-40 dispersed
Sed12g1910 Sed-Chr12:30226674 Sed14g0016 Sed-Chr14:229095 4.20E-36 dispersed
Sed14g0016 Sed-Chr14:229095 Sed14g0018 Sed-Chr14:230191 1.20E-67 dispersed
Sed14g0016 Sed-Chr14:229095 Sed14g0017 Sed-Chr14:230191 5.10E-124 tandem
Sed07g2306 Sed-Chr7:38840372 Sed14g0016 Sed-Chr14:229095 2.00E-53 transposed
Sed14g0016 Sed-Chr14:229095 Sed03g2174 Sed-Chr3:15982439 1.70E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40506 PF00072 Response_reg 8.10E-18 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0016 K14492 - csv:101220999 365.155