Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0016 | ATGGGTATGGTTTCCGAGTCCCAATTCCATGTTCTTGCTGTTGATGACAGCATCATCGATCGCAAACTGATCGAGCGCCTCCTTAAAACCTCCTCTTATCAAGTTACTACCGTTGATTCTGGGAGTAAAGCTTTGGAGTTCTTGGGTTATGACCCTGCAAATAACTCCATTCCTTCTGTTTCTTCTAACCATCTTCATCATCATCCACAGGATGTGGATGTCAATCTTGTTATTACTGATTACTGCATGCCTGGAATGACTGGCTATGATTTGTTGAAGACAATCAAGGGGTCTAAAGCTTTGAGAAACATTCCGGTTGTGATTATGTCATCTGAGAATGTACCTGCAAGAATCAATAGATGTTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCAGACTTACAGATGTCAACAGGCTTAAACCCCACATGTTGAAAACCAAAGTCAATTGTGACAAACCAGAAAGAACAGAAATAGATAAGCCTGATTCTGGAAGCCAATCTCAAGCACTAGAGCAGCTTCAACAACAACAGCAATATGAACATGAACATGGACAAGAACAATTACAACCCCAACTGCAACAGGTCCCGACGCCGCCGCAAGATCAAGATCGATTACAATCAGTACCATTGTTACCAACCCTGCAACAGGAGCAAGAACAGTTGCAATTACTCCCACCAACACCACCGCAACATTCGAACAACAACAAGAGGAAGGCTATGGAAGATGGACTTTCACCGGATAGAACAAGGCCTAGATACAATGGAGCAAAGCCTCTGATCAAATTGAGTGGATGTATCGGAAAAATGTTGATGGAAAAGATGAATTTTCTCTCACAATGGATAATTTTGATGATGGATTGTTTATCGACAGCCAATTTCTTCGGCCTTATCAATGGAAAACCGAGGAGCTTATTCCTTCCCTAA | 933 | 41.91 | MGMVSESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPANNSIPSVSSNHLHHHPQDVDVNLVITDYCMPGMTGYDLLKTIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLTDVNRLKPHMLKTKVNCDKPERTEIDKPDSGSQSQALEQLQQQQQYEHEHGQEQLQPQLQQVPTPPQDQDRLQSVPLLPTLQQEQEQLQLLPPTPPQHSNNNKRKAMEDGLSPDRTRPRYNGAKPLIKLSGCIGKMLMEKMNFLSQWIILMMDCLSTANFFGLINGKPRSLFLP | 310 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 229095 | 231915 | - | Sed0009154.3 | Sed14g0016 | 735734 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0016 | 310 | Gene3D | - | 10 | 250 | - | - | |
Sed14g0016 | 310 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 5 | 226 | IPR045279 | GO:0009736(InterPro) | |
Sed14g0016 | 310 | MobiDBLite | consensus disorder prediction | 227 | 255 | - | - | |
Sed14g0016 | 310 | CDD | REC_typeA_ARR | 11 | 142 | - | - | |
Sed14g0016 | 310 | Pfam | Response regulator receiver domain | 71 | 138 | IPR001789 | GO:0000160(InterPro) | |
Sed14g0016 | 310 | MobiDBLite | consensus disorder prediction | 165 | 208 | - | - | |
Sed14g0016 | 310 | MobiDBLite | consensus disorder prediction | 150 | 164 | - | - | |
Sed14g0016 | 310 | MobiDBLite | consensus disorder prediction | 150 | 208 | - | - | |
Sed14g0016 | 310 | ProSiteProfiles | Response regulatory domain profile. | 10 | 147 | IPR001789 | GO:0000160(InterPro) | |
Sed14g0016 | 310 | SMART | REC_2 | 9 | 146 | IPR001789 | GO:0000160(InterPro) | |
Sed14g0016 | 310 | SUPERFAMILY | CheY-like | 8 | 143 | IPR011006 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0819 | Sed-Chr2:45861278 | Sed14g0016 | Sed-Chr14:229095 | 4.30E-56 | dispersed | |
Sed03g0778 | Sed-Chr3:4680177 | Sed14g0016 | Sed-Chr14:229095 | 1.00E-44 | dispersed | |
Sed04g2967 | Sed-Chr4:41094912 | Sed14g0016 | Sed-Chr14:229095 | 4.00E-39 | dispersed | |
Sed11g1542 | Sed-Chr11:31030429 | Sed14g0016 | Sed-Chr14:229095 | 3.60E-51 | dispersed | |
Sed12g1909 | Sed-Chr12:30226674 | Sed14g0016 | Sed-Chr14:229095 | 7.50E-40 | dispersed | |
Sed12g1910 | Sed-Chr12:30226674 | Sed14g0016 | Sed-Chr14:229095 | 4.20E-36 | dispersed | |
Sed14g0016 | Sed-Chr14:229095 | Sed14g0018 | Sed-Chr14:230191 | 1.20E-67 | dispersed | |
Sed14g0016 | Sed-Chr14:229095 | Sed14g0017 | Sed-Chr14:230191 | 5.10E-124 | tandem | |
Sed07g2306 | Sed-Chr7:38840372 | Sed14g0016 | Sed-Chr14:229095 | 2.00E-53 | transposed | |
Sed14g0016 | Sed-Chr14:229095 | Sed03g2174 | Sed-Chr3:15982439 | 1.70E-82 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40506 | PF00072 | Response_reg | 8.10E-18 | CL0304 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0016 | K14492 | - | csv:101220999 | 365.155 |