Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0017 ATGGGTATGGTTTCCGAGTCCCAATTCCATGTTCTTGCTGTTGATGACAGCATCATCGATCGCAAACTGATCGAGCGCCTCCTTAAAACCTCCTCTTATCAAGTTACTACCGTTGATTCTGGGAGTAAAGCTTTGGAGTTCTTGGGTTATGACCCTGCAAATAACTCCATTCCTTCTGTTTCTTCTAACCATCTTCATCATCATCCACAGGATGTGGATGTCAATCTTGTTATTACTGATTACTGCATGCCTGGAATGACTGGCTATGATTTGTTGAAGACAATCAAGGGGTCTAAAGCTTTGAGAAACATTCCGGTTGTGATTATGTCATCTGAGAATGTACCTGCAAGAATCAATAGATGTTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCAGACTTACAGATGTCAACAGGCTTAAACCCCACATGTTGAAAACCAAAGTCAATTGTGACAAACCAGAAAGAACAGAAATAGATAAGCCTGATTCTGGAAGCCAATCTCAAGCACTAGAGCAGCTTCAACAACAACAGCAATATGAACATGAACATGGACAAGAACAATTACAACCCCAACTGCAACAGGTCCCGACGCCGCCGCAAGATCAAGATCGATTACAATCAGTACCATTGTTACCAACCCTGCAACAGGAGCAAGAACAGTTGCAATTACTCCCACCAACACCACCGCAACATTCGAACAACAACAAGAGGAAGGCTATGGAAGATGGACTTTCACCGGATAGAACAAGGCCTAGATACAATGGTATTACAACCACGGTGTAG 792 42.8 MGMVSESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPANNSIPSVSSNHLHHHPQDVDVNLVITDYCMPGMTGYDLLKTIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLTDVNRLKPHMLKTKVNCDKPERTEIDKPDSGSQSQALEQLQQQQQYEHEHGQEQLQPQLQQVPTPPQDQDRLQSVPLLPTLQQEQEQLQLLPPTPPQHSNNNKRKAMEDGLSPDRTRPRYNGITTTV 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 230191 231915 - Sed0009154.1 Sed14g0017 735735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0017 263 MobiDBLite consensus disorder prediction 150 164 - -
Sed14g0017 263 MobiDBLite consensus disorder prediction 165 237 - -
Sed14g0017 263 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 211 IPR045279 GO:0009736(InterPro)
Sed14g0017 263 MobiDBLite consensus disorder prediction 150 263 - -
Sed14g0017 263 ProSiteProfiles Response regulatory domain profile. 10 147 IPR001789 GO:0000160(InterPro)
Sed14g0017 263 Gene3D - 10 249 - -
Sed14g0017 263 SMART REC_2 9 146 IPR001789 GO:0000160(InterPro)
Sed14g0017 263 CDD REC_typeA_ARR 11 142 - -
Sed14g0017 263 SUPERFAMILY CheY-like 8 143 IPR011006 -
Sed14g0017 263 Pfam Response regulator receiver domain 71 138 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2174 Sed-Chr3:15982439 Sed14g0017 Sed-Chr14:230191 3.30E-84 dispersed
Sed03g2175 Sed-Chr3:15982439 Sed14g0017 Sed-Chr14:230191 1.20E-51 dispersed
Sed07g2306 Sed-Chr7:38840372 Sed14g0017 Sed-Chr14:230191 2.00E-53 dispersed
Sed14g0016 Sed-Chr14:229095 Sed14g0017 Sed-Chr14:230191 5.10E-124 tandem
Sed14g0017 Sed-Chr14:230191 Sed14g0018 Sed-Chr14:230191 2.80E-70 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40507 PF00072 Response_reg 5.50E-18 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0017 K14492 - csv:101220999 370.933