Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0033 ATGGATCCAAAGCATGGGAAGAGGCCCTTTTGTTCCGATGAATCGGATGAAGATAACTCGTTCCCGATCTACTCGGCTAGATCTCAACACGACACGTCGGCCATGGTTTGCGCCCTGTCTCAAGTCATCAATACGAGTAGTGGCAGTAGTAGCAGAAACCCAGTACTAGTAGAAGAACACACAAGAACAACATGGCCGCAATCGCAACCAGCTGCAGTAGATACGGATGCAGAGCTAGGAAGCGGGACGATGATGAAAAGACATTATCGAGGAGTAAGGCAGAGACCTTGGGGAAAGTGGGCTGCTGAGATTCGTGACCCGAAAAAGGCAGCACGAGTGTGGCTAGGCACCTTCGACACTGCCGAGGCTGCCGCACTTGCTTACGATGATGCTGCTCTCAGATTCAAAGGAAACAAAGCCAAGCTCAACTTCCCTGAGAGGCTAGTCCAACAACACTTCCCCATTTCCCATCCTCCACCTCAAAACTACTATGTTCCACCCCCTCCTCCTTATCAAGGGGATTATCATAACCACGACGTTTAG 543 50.46 MDPKHGKRPFCSDESDEDNSFPIYSARSQHDTSAMVCALSQVINTSSGSSSRNPVLVEEHTRTTWPQSQPAAVDTDAELGSGTMMKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDDAALRFKGNKAKLNFPERLVQQHFPISHPPPQNYYVPPPPPYQGDYHNHDV 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 409978 410769 - Sed0013533.1 Sed14g0033 735751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0033 180 PANTHER DNA-BINDING DOMAIN 42 150 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Sed14g0033 180 FunFam Ethylene-responsive transcription factor 2 87 146 - -
Sed14g0033 180 SMART rav1_2 88 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0033 180 ProSiteProfiles AP2/ERF domain profile. 88 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0033 180 Gene3D AP2/ERF domain 87 147 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0033 180 MobiDBLite consensus disorder prediction 45 73 - -
Sed14g0033 180 MobiDBLite consensus disorder prediction 45 71 - -
Sed14g0033 180 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0033 180 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0033 180 MobiDBLite consensus disorder prediction 1 15 - -
Sed14g0033 180 Pfam AP2 domain 88 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0033 180 CDD AP2 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0033 180 MobiDBLite consensus disorder prediction 1 25 - -
Sed14g0033 180 SUPERFAMILY DNA-binding domain 88 146 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0340 Sed-Chr9:3089837 Sed14g0033 Sed-Chr14:409978 2.30E-28 dispersed
Sed10g2031 Sed-Chr10:36862716 Sed14g0033 Sed-Chr14:409978 2.50E-22 dispersed
Sed11g1368 Sed-Chr11:29693351 Sed14g0033 Sed-Chr14:409978 1.30E-25 dispersed
Sed13g0266 Sed-Chr13:1779156 Sed14g0033 Sed-Chr14:409978 5.20E-19 dispersed
Sed14g0033 Sed-Chr14:409978 Sed14g0843 Sed-Chr14:16419559 1.10E-22 dispersed
Sed14g0033 Sed-Chr14:409978 Sed07g0140 Sed-Chr7:1299211 1.60E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40509 PF00847 AP2 9.70E-15 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0033 - - - 0.0