Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0043 ATGACTTCAAGACCTGTAGTTCCTCAACAAATTAGAGGTGAGGCCGCTATCGGCGGAGGAAAGCAGGTTAAGGGCGGGGCGGTGGTGGGTGCGAGGAACCGCCGAGCGCTGGGCGATATCGGAAATCTGGTAACTGTTCGAGGAATTGACGCAAAGGCAAATCGCCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCTGCTGCAAATGCTGAAAATAAAAAGAAACAAGTACCTGTTAGTGTAGATGGGGCTGCTCCCATTCTTGATGGCGGTGTTGCGGCTGCTAAGAAACCAGGAGCGCCAAAGCCAGCACCGAAGAAGGTCGTTGTGAAGCCGGAAGTGGAGGTGATCGAGATAAGTCCAGATACAGCCAAACAAGATCGGGGTAAGGAAGTCAAATGTGCAAACAAGAAGAAGGAAGGAGAAGGGACCTCCAAGAAGAAAGCTCAGACCCTCACTTCAGTCTTGACTGCTAGAAGCAAGGCTGCTTGTTGTGGTGTGACCAAGAAACCCAAAGAGCAGATTTTTGACATTGATGCTGCAGATGTTGGTAATGAATTGGCAGAAGTTGAATATGTTGAAGACATGTACAAGTTCTTCAAGGATGTTGAGAATGAGAACAGGCCTCATGATTACATGGACTCACAACCTGAGATCAACACTTTAATGAGGGCTATTTTGGTGGATTGGTTGGTTGAAGTGCACAACAAGTTTGAACTTTCGCTCGAAACATTCTACCTAACGATCAACATAATCGATCGATTCCTTGCGGCGAAGGTAGTTCCACGAAGGGAATTGCAATTGGTGGGTATTGGGGCAATGCTGATAGCCTCCAAATATGAAGAAATATGGGCACCAGAGGTAAATGACTTTGTGCACCTTTCAGATAGAGCTTACACTAATGAGCAGATACTAATGATGGAGAAAAAGATACTTGGTAAGTTGGAGTGGACCTTGACTGTGCCTACACCTTATGTTTTTCTAGCTCGATTCATCAAGGCGTCAAAGGACTCCGATCACGAGATGGAGAATCTGGTTTACTTTCTGGCTGAACTTGGCATAATGCATTACAACACCACAATAATGTATTCCTCATCGATGATTGCCGCCTCGGCAGTCTATGCAGCTCGCTGCACGCTAAAGAAAACTCCTGGTTGGGATGACACTCTCAAACTGCACACTGGTTTCTCTGAGGCTCAAATAATTGATTGTGCCAAACATCTGGTGGGATTCCATGGGGCAGCAAGCAAGAACAAGCTCCAAATAATATACCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTAGCGTTGCTTCAGCCAGCCAAAGCTCTCTTGGCTATCTAA 1359 46.8 MTSRPVVPQQIRGEAAIGGGKQVKGGAVVGARNRRALGDIGNLVTVRGIDAKANRPITRSFCAQLLANAQAAANAENKKKQVPVSVDGAAPILDGGVAAAKKPGAPKPAPKKVVVKPEVEVIEISPDTAKQDRGKEVKCANKKKEGEGTSKKKAQTLTSVLTARSKAACCGVTKKPKEQIFDIDAADVGNELAEVEYVEDMYKFFKDVENENRPHDYMDSQPEINTLMRAILVDWLVEVHNKFELSLETFYLTINIIDRFLAAKVVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVHLSDRAYTNEQILMMEKKILGKLEWTLTVPTPYVFLARFIKASKDSDHEMENLVYFLAELGIMHYNTTIMYSSSMIAASAVYAARCTLKKTPGWDDTLKLHTGFSEAQIIDCAKHLVGFHGAASKNKLQIIYRKYSSSERGAVALLQPAKALLAI 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 554566 557103 + Sed0011735.1 Sed14g0043 735761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0043 452 Gene3D - 214 325 - -
Sed14g0043 452 PANTHER CYCLINS 175 433 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed14g0043 452 MobiDBLite consensus disorder prediction 132 151 - -
Sed14g0043 452 Pfam Cyclin, C-terminal domain 327 445 IPR004367 -
Sed14g0043 452 SUPERFAMILY Cyclin-like 189 324 IPR036915 -
Sed14g0043 452 ProSitePatterns Cyclins signature. 229 260 IPR048258 -
Sed14g0043 452 SMART cyclin_7 234 318 IPR013763 -
Sed14g0043 452 SMART cyclin_7 331 415 IPR013763 -
Sed14g0043 452 FunFam G2/mitotic-specific cyclin-1 315 441 - -
Sed14g0043 452 Gene3D - 200 441 - -
Sed14g0043 452 SUPERFAMILY Cyclin-like 326 447 IPR036915 -
Sed14g0043 452 SMART Cyclin_C_2 327 446 IPR004367 -
Sed14g0043 452 MobiDBLite consensus disorder prediction 132 152 - -
Sed14g0043 452 PIRSF Cyclin_A_B_D_E 2 452 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed14g0043 452 Pfam Cyclin, N-terminal domain 200 324 IPR006671 -
Sed14g0043 452 CDD CYCLIN_AtCycB-like_rpt1 177 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2142 Sed-Chr3:15548342 Sed14g0043 Sed-Chr14:554566 2.00E-201 dispersed
Sed14g0043 Sed-Chr14:554566 Sed14g1250 Sed-Chr14:21622118 8.70E-64 dispersed
Sed14g0043 Sed-Chr14:554566 Sed14g0044 Sed-Chr14:554566 3.40E-209 tandem
Sed14g0043 Sed-Chr14:554566 Sed03g2149 Sed-Chr3:15582286 1.20E-198 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0043 K21777 - csv:101217210 686.797