Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0044 ATGCAGAAACAAGTACCTGTTAGTGTAGATGGGGCTGCTCCCATTCTTGATGGCGGTGTTGCGGCTGCTAAGAAACCAGGAGCGCCAAAGCCAGCACCGAAGAAGGTCGTTGTGAAGCCGGAAGTGGAGGTGATCGAGATAAGTCCAGATACAGCCAAACAAGATCGGGGTAAGGAAGTCAAATGTGCAAACAAGAAGAAGGAAGGAGAAGGGACCTCCAAGAAGAAAGCTCAGACCCTCACTTCAGTCTTGACTGCTAGAAGCAAGGCTGCTTGTTGTGGTGTGACCAAGAAACCCAAAGAGCAGATTTTTGACATTGATGCTGCAGATGTTGGTAATGAATTGGCAGAAGTTGAATATGTTGAAGACATGTACAAGTTCTTCAAGGATGTTGAGAATGAGAACAGGCCTCATGATTACATGGACTCACAACCTGAGATCAACACTTTAATGAGGGCTATTTTGGTGGATTGGTTGGTTGAAGTGCACAACAAGTTTGAACTTTCGCTCGAAACATTCTACCTAACGATCAACATAATCGATCGATTCCTTGCGGCGAAGGTAGTTCCACGAAGGGAATTGCAATTGGTGGGTATTGGGGCAATGCTGATAGCCTCCAAATATGAAGAAATATGGGCACCAGAGGTAAATGACTTTGTGCACCTTTCAGATAGAGCTTACACTAATGAGCAGATACTAATGATGGAGAAAAAGATACTTGGTAAGTTGGAGTGGACCTTGACTGTGCCTACACCTTATGTTTTTCTAGCTCGATTCATCAAGGCGTCAAAGGACTCCGATCACGAGATGGAGAATCTGGTTTACTTTCTGGCTGAACTTGGCATAATGCATTACAACACCACAATAATGTATTCCTCATCGATGATTGCCGCCTCGGCAGTCTATGCAGCTCGCTGCACGCTAAAGAAAACTCCTGGTTGGGATGACACTCTCAAACTGCACACTGGTTTCTCTGAGGCTCAAATAATTGATTGTGCCAAACATCTGGTGGGATTCCATGGGGCAGCAAGCAAGAACAAGCTCCAAATAATATACCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTAGCGTTGCTTCAGCCAGCCAAAGCTCTCTTGGCTATCTAA 1128 45.74 MQKQVPVSVDGAAPILDGGVAAAKKPGAPKPAPKKVVVKPEVEVIEISPDTAKQDRGKEVKCANKKKEGEGTSKKKAQTLTSVLTARSKAACCGVTKKPKEQIFDIDAADVGNELAEVEYVEDMYKFFKDVENENRPHDYMDSQPEINTLMRAILVDWLVEVHNKFELSLETFYLTINIIDRFLAAKVVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVHLSDRAYTNEQILMMEKKILGKLEWTLTVPTPYVFLARFIKASKDSDHEMENLVYFLAELGIMHYNTTIMYSSSMIAASAVYAARCTLKKTPGWDDTLKLHTGFSEAQIIDCAKHLVGFHGAASKNKLQIIYRKYSSSERGAVALLQPAKALLAI 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 554566 557103 + Sed0011735.2 Sed14g0044 735762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0044 375 FunFam G2/mitotic-specific cyclin-1 238 364 - -
Sed14g0044 375 Gene3D - 137 248 - -
Sed14g0044 375 SUPERFAMILY Cyclin-like 249 370 IPR036915 -
Sed14g0044 375 ProSitePatterns Cyclins signature. 152 183 IPR048258 -
Sed14g0044 375 SUPERFAMILY Cyclin-like 112 247 IPR036915 -
Sed14g0044 375 CDD CYCLIN_AtCycB-like_rpt1 100 245 - -
Sed14g0044 375 Gene3D - 123 364 - -
Sed14g0044 375 Pfam Cyclin, C-terminal domain 250 368 IPR004367 -
Sed14g0044 375 MobiDBLite consensus disorder prediction 48 76 - -
Sed14g0044 375 SMART cyclin_7 157 241 IPR013763 -
Sed14g0044 375 SMART cyclin_7 254 338 IPR013763 -
Sed14g0044 375 MobiDBLite consensus disorder prediction 48 74 - -
Sed14g0044 375 SMART Cyclin_C_2 250 369 IPR004367 -
Sed14g0044 375 PIRSF Cyclin_A_B_D_E 3 375 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed14g0044 375 PANTHER CYCLINS 98 356 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed14g0044 375 Pfam Cyclin, N-terminal domain 123 247 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2143 Sed-Chr3:15548342 Sed14g0044 Sed-Chr14:554566 3.90E-167 dispersed
Sed03g2149 Sed-Chr3:15582286 Sed14g0044 Sed-Chr14:554566 1.30E-170 dispersed
Sed14g0044 Sed-Chr14:554566 Sed14g1250 Sed-Chr14:21622118 7.20E-64 dispersed
Sed14g0043 Sed-Chr14:554566 Sed14g0044 Sed-Chr14:554566 3.40E-209 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0044 K21777 - csv:101217210 584.719