Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0045 | ATGAGGGAAGAACACTCCAATTGGTTCTCCAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTCGCTTTGGCTTTTGATATTCAAAATCCCTCCCATAGCAGCCCGCCACTGCCTTGCCCCTCTCCGCCGCTTTCCAATCCCTTACCGGGATCCGGCAACGGAATTGCGCCGCCCAACTCGGCGGATTTCGGCGATTCCGCCGATTTAGGCTCCGGCGCCGGAAGCGACGAGCCGGCTCGGACCCTGAAGCGCCCGCGCCTTGTCTGGACTCCACAGCTCCACAAGCGGTTCGTGGATGCGGTTGCTCATTTGGGGATAAAAAATGCTGTCCCCAAGACCATAATGCAGCTCATGAGTGTGGATGGGTTGACCCGAGAGAACGTTGCTAGCCACTTGCAGAAGTACCGCCTCTATCTTAAGAGGATGCAGGGCTTGTCGGGCGGCGGCGGCAGCGCTGCCTTGATGGCTTCGTCCGATCCCGCCACGGATCATCTGTTCGCTAGCTCCCCGGTCCCTCCCCATTTGCTTCACCCTGCTCGTGCCAGTTCAGACCATTTCCTGCCCTTTGTTCCCATGACCACCTTGCAGCAGCATCACCATCACCAGCAGCAGATTGCTGCTGCTGCTGGCGTTGTTGCCCACCCGCAGCTCCAGCCGTCTTATCACCGACAGGTCGGGCATTTCGGGTCCCCGCCCAATGGGCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGGGCACCCATGCATAGTTCAGTTCCAAATTACATTGATGATTTGGAATCGGCTAATGCTAGTGGAGGAAGAAAAGTTCTTACCTTATTCCCTACTGGGGATGATTGA | 900 | 55.78 | MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSHSSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAGSDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGSAALMASSDPATDHLFASSPVPPHLLHPARASSDHFLPFVPMTTLQQHHHHQQQIAAAAGVVAHPQLQPSYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPMHSSVPNYIDDLESANASGGRKVLTLFPTGDD | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 564554 | 566818 | + | Sed0004698.1 | Sed14g0045 | 735763 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0045 | 299 | SUPERFAMILY | Homeodomain-like | 94 | 154 | IPR009057 | - | |
Sed14g0045 | 299 | FunFam | Two-component response regulator | 93 | 156 | - | - | |
Sed14g0045 | 299 | MobiDBLite | consensus disorder prediction | 1 | 96 | - | - | |
Sed14g0045 | 299 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Sed14g0045 | 299 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 102 | 153 | IPR017930 | - | |
Sed14g0045 | 299 | Pfam | Myb-like DNA-binding domain | 100 | 149 | IPR001005 | - | |
Sed14g0045 | 299 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 5 | 284 | IPR044841 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g0045 | 299 | MobiDBLite | consensus disorder prediction | 46 | 60 | - | - | |
Sed14g0045 | 299 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 98 | 150 | IPR006447 | GO:0003677(InterPro) | |
Sed14g0045 | 299 | Gene3D | - | 94 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0794 | Sed-Chr2:45622012 | Sed14g0045 | Sed-Chr14:564554 | 7.60E-95 | dispersed | |
Sed12g1174 | Sed-Chr12:7835665 | Sed14g0045 | Sed-Chr14:564554 | 9.70E-81 | dispersed | |
Sed13g1419 | Sed-Chr13:19503532 | Sed14g0045 | Sed-Chr14:564554 | 3.00E-37 | dispersed | |
Sed13g1420 | Sed-Chr13:19503532 | Sed14g0045 | Sed-Chr14:564554 | 3.00E-37 | dispersed | |
Sed13g1980 | Sed-Chr13:24680189 | Sed14g0045 | Sed-Chr14:564554 | 2.60E-19 | dispersed | |
Sed13g1981 | Sed-Chr13:24680189 | Sed14g0045 | Sed-Chr14:564554 | 2.20E-19 | dispersed | |
Sed14g0045 | Sed-Chr14:564554 | Sed14g0820 | Sed-Chr14:15844277 | 2.10E-13 | dispersed | |
Sed14g0045 | Sed-Chr14:564554 | Sed03g2144 | Sed-Chr3:15552114 | 4.30E-144 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40510 | PF00249 | Myb_DNA-binding | 2.20E-08 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0045 | - | - | - | 0.0 |