Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0045 ATGAGGGAAGAACACTCCAATTGGTTCTCCAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTCGCTTTGGCTTTTGATATTCAAAATCCCTCCCATAGCAGCCCGCCACTGCCTTGCCCCTCTCCGCCGCTTTCCAATCCCTTACCGGGATCCGGCAACGGAATTGCGCCGCCCAACTCGGCGGATTTCGGCGATTCCGCCGATTTAGGCTCCGGCGCCGGAAGCGACGAGCCGGCTCGGACCCTGAAGCGCCCGCGCCTTGTCTGGACTCCACAGCTCCACAAGCGGTTCGTGGATGCGGTTGCTCATTTGGGGATAAAAAATGCTGTCCCCAAGACCATAATGCAGCTCATGAGTGTGGATGGGTTGACCCGAGAGAACGTTGCTAGCCACTTGCAGAAGTACCGCCTCTATCTTAAGAGGATGCAGGGCTTGTCGGGCGGCGGCGGCAGCGCTGCCTTGATGGCTTCGTCCGATCCCGCCACGGATCATCTGTTCGCTAGCTCCCCGGTCCCTCCCCATTTGCTTCACCCTGCTCGTGCCAGTTCAGACCATTTCCTGCCCTTTGTTCCCATGACCACCTTGCAGCAGCATCACCATCACCAGCAGCAGATTGCTGCTGCTGCTGGCGTTGTTGCCCACCCGCAGCTCCAGCCGTCTTATCACCGACAGGTCGGGCATTTCGGGTCCCCGCCCAATGGGCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGGGCACCCATGCATAGTTCAGTTCCAAATTACATTGATGATTTGGAATCGGCTAATGCTAGTGGAGGAAGAAAAGTTCTTACCTTATTCCCTACTGGGGATGATTGA 900 55.78 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSHSSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAGSDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGSAALMASSDPATDHLFASSPVPPHLLHPARASSDHFLPFVPMTTLQQHHHHQQQIAAAAGVVAHPQLQPSYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPMHSSVPNYIDDLESANASGGRKVLTLFPTGDD 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 564554 566818 + Sed0004698.1 Sed14g0045 735763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0045 299 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Sed14g0045 299 FunFam Two-component response regulator 93 156 - -
Sed14g0045 299 MobiDBLite consensus disorder prediction 1 96 - -
Sed14g0045 299 MobiDBLite consensus disorder prediction 1 18 - -
Sed14g0045 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Sed14g0045 299 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Sed14g0045 299 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 284 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0045 299 MobiDBLite consensus disorder prediction 46 60 - -
Sed14g0045 299 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Sed14g0045 299 Gene3D - 94 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0794 Sed-Chr2:45622012 Sed14g0045 Sed-Chr14:564554 7.60E-95 dispersed
Sed12g1174 Sed-Chr12:7835665 Sed14g0045 Sed-Chr14:564554 9.70E-81 dispersed
Sed13g1419 Sed-Chr13:19503532 Sed14g0045 Sed-Chr14:564554 3.00E-37 dispersed
Sed13g1420 Sed-Chr13:19503532 Sed14g0045 Sed-Chr14:564554 3.00E-37 dispersed
Sed13g1980 Sed-Chr13:24680189 Sed14g0045 Sed-Chr14:564554 2.60E-19 dispersed
Sed13g1981 Sed-Chr13:24680189 Sed14g0045 Sed-Chr14:564554 2.20E-19 dispersed
Sed14g0045 Sed-Chr14:564554 Sed14g0820 Sed-Chr14:15844277 2.10E-13 dispersed
Sed14g0045 Sed-Chr14:564554 Sed03g2144 Sed-Chr3:15552114 4.30E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40510 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0045 - - - 0.0