Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0127 ATGGTTGATTACGCCATGGACATCCACAAGTCGCTGTACCGCACCGAAGAAGTCCCTCAAGACCAAATTTATAATTTAAGCTCGATTTTATTGCGTGTTTTGGGTCTGAATTTGTGGTGTGATCGAAGGTTGAAAGTGGTGTCGAGGCTTAAAGCTTTGGAGGAGTCTGCGGCGCCGCTCGTTACTTTTCTGCAGAATCCGGCTGCTGTTCAGGAATTGAGAGCTGATAAGCAGTATATAACCTTCAAATGCTTAAGGATTGTTATCAGATCAAATCGAAGCATTATATCAATCGCCAAATTTCAGTTCGAGTGCGGTAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAGCCTTATGCACAGACAGTGAAACGAGCCAGAGTGCTCTGTGGGGAAAATTGGCAGCTGAGATTTTAATGCAGAACTGGGATATTGCTGTCGACGAGCTTAATCGTTTAAAGGAAATTATTGACTCTAAGGCATTTAAATGCCATTCAAACCAATGCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGTGCTCTTATAAGGATCCCATAACAGAGTTCTTGGCTTGTGTGTATGTCAATTATGATTTTGATGGGGCACAGAAGAAGATGAGGGAGTGTGAAGAAGTCACATTGAATGATCCTTTCCTTGGAAAGAAGCTGGAAGAAGGCAGCCTTTCTACTGTTCCTTTGCGAGACGAGTTTTTGGAGAGCGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACATCAGCGCATTGATATGCGCGTCCTTGCCGAGAAGTTGAACTTGAATTACGAGGAGGCTCAGAGGTGGATTGTAAATCTTGTTCGGACGTCAAAGCTCGACGCCAAGATTGATTCTAAGACGGGAACGGTTATAACGGAACCAAACCAACCTAACGTGTATGAGCAACTGATAGACCACACAAAGTCATTATCTGGGCGTACTTACAAGTTAGTGACTCAACTTGTAGAGCATGCACAGGCTCAAGCAGCTAGATAA 1023 43.3 MVDYAMDIHKSLYRTEEVPQDQIYNLSSILLRVLGLNLWCDRRLKVVSRLKALEESAAPLVTFLQNPAAVQELRADKQYITFKCLRIVIRSNRSIISIAKFQFECGNYSGAADYLYQYRALCTDSETSQSALWGKLAAEILMQNWDIAVDELNRLKEIIDSKAFKCHSNQCKDFIKVIQQEQCSYKDPITEFLACVYVNYDFDGAQKKMRECEEVTLNDPFLGKKLEEGSLSTVPLRDEFLESARLFIFETYCRIHQRIDMRVLAEKLNLNYEEAQRWIVNLVRTSKLDAKIDSKTGTVITEPNQPNVYEQLIDHTKSLSGRTYKLVTQLVEHAQAQAAR 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1411502 1417227 - Sed0024607.1 Sed14g0127 735845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0127 340 Pfam Eukaryotic translation initiation factor 3 subunit E, C-terminal 307 327 - -
Sed14g0127 340 Pfam PCI domain 210 302 IPR000717 -
Sed14g0127 340 SUPERFAMILY Winged helix DNA-binding domain 237 307 IPR036390 -
Sed14g0127 340 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 235 319 IPR000717 -
Sed14g0127 340 Gene3D - 165 336 - -
Sed14g0127 340 ProSiteProfiles PCI domain profile. 106 306 IPR000717 -
Sed14g0127 340 PIRSF Transl_init_eIF3e 37 171 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed14g0127 340 PIRSF Transl_init_eIF3e 1 33 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed14g0127 340 PIRSF Transl_init_eIF3e 165 340 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed14g0127 340 CDD eIF3E 1 332 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed14g0127 340 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 168 337 IPR016650 GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2210 Sed-Chr3:16424182 Sed14g0127 Sed-Chr14:1411502 7.20E-133 dispersed
Sed03g2211 Sed-Chr3:16424182 Sed14g0127 Sed-Chr14:1411502 1.30E-72 dispersed
Sed14g0127 Sed-Chr14:1411502 Sed03g2209 Sed-Chr3:16424182 3.50E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0127 K03250 - csv:101205199 454.907