Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0140 ATGGTGCATCACTATATGCGATGGAAAAAAGGGGCAAATTCAAAAACAACGCCCAAATATGAAGAACAAGAACAACAACAAGAACACAAATCTATGGCCTGTGATGAGTTTTATCCCATCAAAACCAAACCCAACAAGCTTTTCTTCCTTCTTTTTCTTTCTTTTCTCTATTCCTCCTTCCTTTTTGCCCCCCATTTCTTCTCTTCTTTCTATTCTTTTGGTGTTCTGAATGGTGGTGTTTCTGCTGATCAACAGGGTTTTGTTCCTCTCTGTTCTTCCATCCCTAATGGAACCATATGTTGTGACAGAAATAGCATTCGCTCTGATATCTGTATTATGAAAGGAGATATAAGAATAGATTCTTCTTCCTCATCGATCTATCTCTACACCGCACCTGATTTCCCGATCGATAATAGCGAAGACGAAGATGGGGTGATCCAACTCGAAACGATCAAGCCATACACAAGGAAATGGGAGAAAAACACCATGAATACAATTGATGAATTAGAGCTCATTGTTAAACGAAAGAGCAATACCATCGACCGTCGACACCGGTGTGATGTTCGACATGATGTTCCGGCTGTGTTCTTCTCGACGGGAGGCTACACGGGCAATGTTTATCACGAATTCAACGACGGGATTCTTCCGCTTTATATAACTTCCCAACATTTGAAAAAGGAGGTTGTTTTTGTGATCCTTGAGTATCACAAATGGTGGATAACAAAATATGGTGATATCCTTTCTCAACTCTCAAATTATCCTCCAATAGACTTTAGAAAAAACAATAAAACTCATTGCTTTCCTCAAGTGATTGCTGGCTTGAGAATCCATGATGAGCTGACTGTGGAGCCTTCTTTGATGGAAGGGAACAAGTCCATTGTTGACTTCCGAAACCTATTGGACGCGGCGTACCAACCCCGAATCCAAGAGTTGATTCGACATGAGGAGAAAGAAGCGAAAAAAGAGGTGAAAATTTCTTCACAACCAAAATTGGTGGTTTTGTCACGGAAGGGGTCGAGGGCAATAACGAATGAGATCTTGATGGTGAAGATGGCGGAGAGGATCGGGTTCGAGGTGAAAGTTTTGAGACCAGATAGAGCAACAGAGCTGGCCAAGATTTATAGAGAGCTCAATGAAAGTGATGTAATGGTAGGAGTCCATGGAGCTGCCATGACACACTTTCTATTTATGAGGCCTAATTCAATTTTCATCCAAATCATCCCCTTGGGGACTGTTTGGGCAGCCGAAACATACTATGGTGAGCCCGCAAAGAAGCTCGGTTTGAAGTACATTGGGTACGAAATTCGGCCAAAAGAGAGTTCGCTATATAAAAGATATGATAAGGAAGATCCGGTTCTTGTCGATCCAGATAGCATTACGAAAAAAGGATGGGAATACACAAAGAAGATCTATCTTGATGGCCAGAATGTGAGGCTGAATCTTGCACGGTTTCAGAAACGGTTGGACCGAGCTTATTACTACTGCATTGCTCGTACCCGACACCGTGGTCCATTGGACTCATAG 1524 42.26 MVHHYMRWKKGANSKTTPKYEEQEQQQEHKSMACDEFYPIKTKPNKLFFLLFLSFLYSSFLFAPHFFSSFYSFGVLNGGVSADQQGFVPLCSSIPNGTICCDRNSIRSDICIMKGDIRIDSSSSSIYLYTAPDFPIDNSEDEDGVIQLETIKPYTRKWEKNTMNTIDELELIVKRKSNTIDRRHRCDVRHDVPAVFFSTGGYTGNVYHEFNDGILPLYITSQHLKKEVVFVILEYHKWWITKYGDILSQLSNYPPIDFRKNNKTHCFPQVIAGLRIHDELTVEPSLMEGNKSIVDFRNLLDAAYQPRIQELIRHEEKEAKKEVKISSQPKLVVLSRKGSRAITNEILMVKMAERIGFEVKVLRPDRATELAKIYRELNESDVMVGVHGAAMTHFLFMRPNSIFIQIIPLGTVWAAETYYGEPAKKLGLKYIGYEIRPKESSLYKRYDKEDPVLVDPDSITKKGWEYTKKIYLDGQNVRLNLARFQKRLDRAYYYCIARTRHRGPLDS 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1537189 1539572 + Sed0007270.1 Sed14g0140 735858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0140 507 MobiDBLite consensus disorder prediction 1 25 - -
Sed14g0140 507 Pfam Glycosyltransferase 61 307 403 IPR049625 GO:0016757(InterPro)
Sed14g0140 507 PANTHER GLYCOSYLTRANSFERASE 46 493 IPR007657 GO:0016757(PANTHER)|GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0140 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2987 Sed-Chr8:40439530 Sed14g0140 Sed-Chr14:1537189 2.20E-70 dispersed
Sed08g2988 Sed-Chr8:40439530 Sed14g0140 Sed-Chr14:1537189 2.00E-70 dispersed
Sed01g1752 Sed-Chr1:12728615 Sed14g0140 Sed-Chr14:1537189 3.00E-67 transposed
Sed14g0140 Sed-Chr14:1537189 Sed03g2224 Sed-Chr3:16639576 1.20E-226 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g552 . . . . . . . . . Cmo06g00897 . . . . . . . . . . . . . . Cla10g00490 Cam10g0480 Cec10g0499 Cco10g0485 Clacu10g0499 Cmu10g1326 Cre10g0731 . . . . . Csa03g00494 . Cme06g02858 . . . . . . . . Sed14g0140 . . . . . . . . Bhi11g00593 Tan01g1728 Cmetu06g2813 . . . . . . . . . . . Lsi05g00579 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002716 7 0 2 6 5 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 2 2 2 2 57