Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0146 ATGGCGACTTCATGGCGGCAGCTCAAGGCCATGCTCCGCAAGAACTGCCTCCTCAAAATCCGCCACCCGTTCATCACCGCCGCAGAGATTTTACTTCCGACTGTGGTGATGTTGTTACTGATAGCTGTAAGGACGCAAGTTGATAACACAGTTCATCCTCCGCAACCGCATATACAAAAAAAAATGTTTGTAGAAATTGGCAAAGGTATATCCCCGAGTTTCCAGGAAGTTCTGGAGTCATTAAGGAAAAATGGAGAATATCTGGCTTTTGCACCGGATACAGTTGAGACAAAGACCATGCTACGTTTGATGTCAATACAATTTCCTCTTTTAGAGGTAGTTACTAGGGTCTACAAAGATGAACAGGAGCTGGAAACCTACATTCGGTCTGATCTGTATGGAAACTGCAATGAAGTTAAGAACTCGAACTGTTCAAATCCTAAAATTAAAGGAGCCGTGGTATTCCATGAGCAAGGTCCAAAGTTGTTTGATTACAGCATTCGTCTCAATCATACTTGGGCTTTCTCAGGATTTCCTAATGTTAGATCCATTATGGACATGAATGGTCCATATCTCAATGACCTGGAACTGGGTGCAACTAATGTACCAACAATGCAATATAGCGTCAGTGGATTTTTAACTATTCAGCAAGTCATGGATTCATTCATAATATTTGCTTCCCAGGAAATGGAATCTAATATTCTCCATTTAAGAAGAAAAAATACTTCATCAAACTCCTCTAGCAACCCTTCCTTGCCAAATTTGCCATGGACACAATTTAGCCCATCAAACATACGAATTGTCCCCTTTCCAACTAGGGAGTATGTCGATGATGAATTCCAGTCTATTGTGAAGAGAGTGATGGGTGTGTTGTATTTGTTGGGATTTCTCTACCCAGTTTCTCGCCTTATCAGTTATTATGCATTTGAGAAGGAAGAGAAGATCAAAGAAGGCCTCTACATGATGGGTCTGAAAGATGGGATATTCCATCTTTCTTGGTTTATTTCATATGCTGTACAGTTTGCCATATCAGCTGGAATTATAACTTTCTGCACGATGCATAACCTTTTCAAGTACAGTGACAAGACAGTGGTCTTCATCTATTTCTTTTCATTTGGATTAAGTGCAATCATGTTTTCATTTCTGATTTCTACGTTCTTCAAGCGAGCAAAAACTGCTGTGGCAGTGGGAACACTGTCTTTTCTAGGTGCCTATTTTCCCTACTATACTGTTAACGATGAAACTGTATCCGTGATAATGAAGGCAATTGCCTCATTGCTTTCACCAACGGCTTTTGCTTTAGGGTCCATTAACTTTGCAGATTATGAACGGGCTCGTGTTGGACTTCGATGGAGCAACCTATGGAGGGCATCCTCTGGAGTAAATTTTTTGGCGTGTCTTTTAATGATTCTCTTTGACACGCTACTGTACTGTGCAATTGGTCTGTACATGGATAAGATTCTTTCAAGGGAAAATGTGTTTGGTTCTTCATGGGGTTGCTTTCTCCGCAAATTCTTCTCAAGAAAAAGGAGTGTTAGCGAGCATGATACTCCCATAGACTTTAAAATTGCAGATGCAACATCTGTAGAAAATGCTCAAGCGTCTAGAAAAGGTACCTTTGATCCTGTAGTGGAGGCTATTAGTTTGGACATGAAGCAACAAGAAACAGATGGCAGATGCATCCAGATAAGAAATCTTCATAAAGTTTATGATACAAAGATGGGGAAATATTGCGCTGTTGACTCTTTACAACTCACCCTCTATGAAAATCAGATTCTTGCACTTTTAGGGCATAATGGAGCTGGGAAAAGTACGACTATATCCATGCTTGTTGGCCTTCTTCCTCCTACTGGTGGGGACGCTCTGGTGCTTGGCAAGAATATCATAACAGAGATGAAAGAAATACGGAAAGAGTTGGGTGTGTGTCCCCAGAATGACATTCTCTTCCCAGAGCTGACTGTACGAGAACACTTGGAAATATATGCCACATTGAAAGGTGTGAAGGAAGACATTTTGGAAAGGACTGTTGTTGATATGGTTGATGAAGTTGGCCTAGCTGATAAAATTAACACTCTTGTGAATGCTCTTTCGGGTGGCATGAAGAGGAAACTGTCCTTAGCAATTGCGTTGATAGGGGACAGCAAGGTGATTGTGCTTGATGAGCCTACTAGTGGAATGGATCCATACTCAATGCGCTTGACACGGCAATTAATTAAGAAGATAAAGAAGGGTAGAATCATACTTCTGACAACACACTCAATGGATGAAGCTGATGAACTTGGAGATCGGATAGCCATTATGGCTAATGGATCTCTGAAATGTTGCGGAAGTTCTCTTTTCTTAAAGCGTCAATATGGAGTTGGTTATACTCTTACGTTAGTGAAGTCTGCACCTACTGTCTCCGTTGCTGCAGATATCATCTATCGTCATATTCCATCAGCAGTCTGTGTGAGTGAGGTTGGAACTGAGATCTCTTTTAAGCTTCCTATATCTTCTGCTTCGTCATTTGAGAGCATGTTTAGGGAAATTGAAAATTACATGGGAAGATCAGTTTCGAATTCTGAAATGAATTGTTCATCCGATACAAGTAATGGTGATGACCATCTTGGAATTGAAAGTTACGGTATATCTGTTACAACGCTTGAGGAAGTATTCTTGAGAGTTTCTGGATGTGATTTTGACGTTGCACACAGTGAGCAGGAAGAAGGCCCTCTCCTTGCTAGCTCTGTGGTTTCAAATATTTCTGTTCATGAGTCTCAGCAGTTAGGGAAATCTGAAAAGTCTGGGTTCTTTGCTGTCGCAGTAAGGAGAGCATGCGGTTTGATATTTTCAACATGTTTTAGTATTATTAACTTTCTGAGTATACATTGCTGTGGCTGTGATATACTATGGAGATCTAAGTTTTGGCAACATTCTAAAGCATTATTTATTAAGAGGGCGATATCTGCTCGTAGAGACCGCAGGACAGTTGTCTTCCAACTTTTGATTCCAGTCGTATTCTTGTTTGTCGGTCTTCTCTTTCTTAAGCTCAAGCCACATCCTGACCAGCAGTCGGTAACTTTGACAACTTCAGAATTTAATCCAGAATTAATTAGTGGTGGTGGTGGTGGTCCAATTCCTTTTGATCTGCACTGGCCTATTTCCAAGCAGGTTGCTCATTATATTGAAGGTGGTTGGATTCAAAATTATAAACCTAGTGCTTATAAGTTCCCTGATGCTGAAATAGCATTGTCCAATGCAATAGAAGCAGCCGGAGAAACTCTGGGACCAATTCTATTATCCATGAGTGAATATCTAATGTCTAGCTTCAATGGATCCTACCAATCAAGGTATGGAGCAATAGTTATGGATGATCAGAATGGTGACGGCAGTTTAGGGTATACTGTACTGCATAATTGTTCCTGTCAGCATTCTGCGCCAACCTTTATCAATTTGGTGAATGCTGCCATACTAAGACTTGCTACTGGTGACCAGAATATGACTATTCAAACACGAAATCACCCTCTCCCAATGGCAAAAAGCCAGCGCTTGCAACGCCATGATCTGGATGCTTTCGCTGCTGCTATCATTGTTAATATGGCCTTGTGTTTTATTCCTGCATCTTTTGCTGTTTCTCTTGTGAAGGAACGTGAAACAAAAGCTAAACAACAGCAAATGATCAGTGGGGTTTCAATGCTTTCGTACTGGACATCTACTTACATATGGGACATTATCAGCTTCTTGGTTCCTACTTGTTTAGCACTGATCCTCTTTTACATCTTTGGTATGGACCAGTTCATTGGTAAAGGTAGATTTCTAGCAACGGCTATCTTATTTTTGGAGTACGGAATGGCTATTGCATCATCAACATATTGCCTTACATTTTTCTTTCTAGACCATACTGTTGCTCAGAATGTGGTTCTCTCCGTCCACTTTTTCACTGGGCTCATTCTTATGGTTATTTCATTTATTATGGGTCTGATCAAAACAACGGCAAAAACAAATTCTTTTCTTAAGAATTTCTTTAGAATATCACCTGGGTTTTGCTTTGCTGATGGACTTGCTTCATTGGCTCTTCTCCGGCAGGGGATAAAAGACAAAACAAGTGATAGGGTTTATGATTGGAATGTTACTGGTGCCTCAATATGTTATCTTGGTGTACAGTCTGTGTGTTACTTTCTCTTAACTCTTGGTCTCGAATCACTGCCTCTCCATAAATTGACTCCTATTGCAGTCAAGCAGTGGTGGATCAATTGTTGGAGGAGAAATCTCGCAAACGCTCAAATTGAAACTTCATCTCCTAGCTTGGAGCCCCTTCTTACACCTTCTCCAGAGTATTTTACTCCTCACTTTGATCTAGACGCAGATGTAACAGCAGAAAGAAATAGGGTTCTGTCAGGTTCTACCGACAATGCCATTATCTGCTTGAGGAATCTTCGAAAGGTCTATCCTGGAGAAACTTATCTCCACAAGAAAGTGGCGGTGGATTCTTTAACTTTCTCGGTCCAAGAGGGTGAATGCTTTGGTTTTCTAGGAACAAATGGCGCTGGGAAGACCACAACTCTATCAATGCTTACTGGAGAAGAATCTCCCAGTGAGGGAACTGCTTTCATTTTTGGAAAGGATATGAGATCTGATCCAAAGGTTGCTCGTTGTCATATTGGATATTGCCCACAGTTTGATGCTCTATTAGAGTTCCTTACCGCAAAGGAGCATCTAGAACTTTATGCAAGAATAAAAGGTGTTCCAAAGTGGAAGATAAATGATGTCGTCAGGGAAAAATTGATGGATTTTGACTTGCTGAAGCATGCTAATAAACCATCATATTCACTGAGTGGAGGAAACAAACGTAAACTCTCCGTTGCCATTGCGATGATTGGAGAACCTCCTGTCGTTATTCTTGATGAGCCATCCACAGGGATGGATCCTATTGCCAAACGATTCATGTGGGATGTAATATCACGGATTTCCACCAGACAAGGAAAGACAGCAGTTATCCTCACCACTCACAGTATGAATGAAGCTCAAGCACTTTGCACTCGTATTGGAATCATGGTTGGAGGACGACTTCGTTGCATAGGAAGTTCCCAACATTTGAAAACACGATTTGGAAATCATCTTGAGCTAGAGGTCAAACCTCATGAAATCCGTCCAGAGGACTTGTTTAACCTTTGCCAAAATATCCGTGAGCGGTTTTTTGATTTTCCGTCGCACCCAAGAAGCTTAATGAATGACATTGAAGTTTGTATGGGAGCTACTGATCCCATCACGCCCGAAAATCAATCAGTGAAAGAGATTAGTTTGTCTAGGCAAATGTTGATCATGATTGGACGTTGGCTTGGTAATGAAGAAAGAATAAAAACACTTGTATCCTCACTGTCTACTGCTCCTGGGGTTTTTGGTGAACAATTGACAGAGCTATTTTTTCGAGAGGGCAGTATACCGTTACCTATATTTTCAGAGTGGTGGTTAGCCACAGAGAAGTTCTCAGAGATTAATTCATTTATTGTGTCTTCATTCCCTGGTGCAACACTCCATTCGTGTAATGGGTTGAGTATGAAGTATCAGTTGCCTTATGGGGAGGATGGCCTCTCGCTTGCAGATGCTTTTGGTCACCTTGAGAGAAACAGAAAAAAGCTTGGGATTTCCGAATACAGCCTCAGCCAATCGACATTAGAAACGATATTTAATCATTTTGCCTCGAATCCTTGA 5691 41.06 MATSWRQLKAMLRKNCLLKIRHPFITAAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIQKKMFVEIGKGISPSFQEVLESLRKNGEYLAFAPDTVETKTMLRLMSIQFPLLEVVTRVYKDEQELETYIRSDLYGNCNEVKNSNCSNPKIKGAVVFHEQGPKLFDYSIRLNHTWAFSGFPNVRSIMDMNGPYLNDLELGATNVPTMQYSVSGFLTIQQVMDSFIIFASQEMESNILHLRRKNTSSNSSSNPSLPNLPWTQFSPSNIRIVPFPTREYVDDEFQSIVKRVMGVLYLLGFLYPVSRLISYYAFEKEEKIKEGLYMMGLKDGIFHLSWFISYAVQFAISAGIITFCTMHNLFKYSDKTVVFIYFFSFGLSAIMFSFLISTFFKRAKTAVAVGTLSFLGAYFPYYTVNDETVSVIMKAIASLLSPTAFALGSINFADYERARVGLRWSNLWRASSGVNFLACLLMILFDTLLYCAIGLYMDKILSRENVFGSSWGCFLRKFFSRKRSVSEHDTPIDFKIADATSVENAQASRKGTFDPVVEAISLDMKQQETDGRCIQIRNLHKVYDTKMGKYCAVDSLQLTLYENQILALLGHNGAGKSTTISMLVGLLPPTGGDALVLGKNIITEMKEIRKELGVCPQNDILFPELTVREHLEIYATLKGVKEDILERTVVDMVDEVGLADKINTLVNALSGGMKRKLSLAIALIGDSKVIVLDEPTSGMDPYSMRLTRQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKRQYGVGYTLTLVKSAPTVSVAADIIYRHIPSAVCVSEVGTEISFKLPISSASSFESMFREIENYMGRSVSNSEMNCSSDTSNGDDHLGIESYGISVTTLEEVFLRVSGCDFDVAHSEQEEGPLLASSVVSNISVHESQQLGKSEKSGFFAVAVRRACGLIFSTCFSIINFLSIHCCGCDILWRSKFWQHSKALFIKRAISARRDRRTVVFQLLIPVVFLFVGLLFLKLKPHPDQQSVTLTTSEFNPELISGGGGGPIPFDLHWPISKQVAHYIEGGWIQNYKPSAYKFPDAEIALSNAIEAAGETLGPILLSMSEYLMSSFNGSYQSRYGAIVMDDQNGDGSLGYTVLHNCSCQHSAPTFINLVNAAILRLATGDQNMTIQTRNHPLPMAKSQRLQRHDLDAFAAAIIVNMALCFIPASFAVSLVKERETKAKQQQMISGVSMLSYWTSTYIWDIISFLVPTCLALILFYIFGMDQFIGKGRFLATAILFLEYGMAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIKTTAKTNSFLKNFFRISPGFCFADGLASLALLRQGIKDKTSDRVYDWNVTGASICYLGVQSVCYFLLTLGLESLPLHKLTPIAVKQWWINCWRRNLANAQIETSSPSLEPLLTPSPEYFTPHFDLDADVTAERNRVLSGSTDNAIICLRNLRKVYPGETYLHKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLTGEESPSEGTAFIFGKDMRSDPKVARCHIGYCPQFDALLEFLTAKEHLELYARIKGVPKWKINDVVREKLMDFDLLKHANKPSYSLSGGNKRKLSVAIAMIGEPPVVILDEPSTGMDPIAKRFMWDVISRISTRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSSQHLKTRFGNHLELEVKPHEIRPEDLFNLCQNIRERFFDFPSHPRSLMNDIEVCMGATDPITPENQSVKEISLSRQMLIMIGRWLGNEERIKTLVSSLSTAPGVFGEQLTELFFREGSIPLPIFSEWWLATEKFSEINSFIVSSFPGATLHSCNGLSMKYQLPYGEDGLSLADAFGHLERNRKKLGISEYSLSQSTLETIFNHFASNP 1896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1603466 1650797 - Sed0024936.1 Sed14g0146 735864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0146 1896 CDD ABC_subfamily_A 1467 1693 - -
Sed14g0146 1896 FunFam ABC transporter A family member 1 1456 1710 - -
Sed14g0146 1896 CDD ABC_subfamily_A 561 782 - -
Sed14g0146 1896 Pfam ABC transporter 581 724 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed14g0146 1896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 558 800 IPR027417 -
Sed14g0146 1896 FunFam ATP-binding cassette sub-family A member 12 553 798 - -
Sed14g0146 1896 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1467 1705 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed14g0146 1896 Pfam ABC-2 family transporter protein 988 1390 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Sed14g0146 1896 Pfam ABC-2 family transporter protein 214 471 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Sed14g0146 1896 ProSitePatterns ABC transporters family signature. 1604 1618 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed14g0146 1896 SMART AAA_5 1497 1684 IPR003593 GO:0016887(InterPro)
Sed14g0146 1896 SMART AAA_5 589 771 IPR003593 GO:0016887(InterPro)
Sed14g0146 1896 ProSitePatterns ABC transporters family signature. 696 710 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed14g0146 1896 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 761 1894 IPR026082 GO:0005319(PANTHER)|GO:0006869(PANTHER)|GO:0016020(InterPro)|GO:0042626(PANTHER)|GO:0043231(PANTHER)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed14g0146 1896 Pfam ABC transporter 1489 1631 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed14g0146 1896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1462 1699 IPR027417 -
Sed14g0146 1896 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 561 794 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed14g0146 1896 Gene3D - 1456 1707 IPR027417 -
Sed14g0146 1896 Gene3D - 547 797 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0146 K05643 - - csv:101206409 3277.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0202 Sed-Chr8:1152960 Sed14g0146 Sed-Chr14:1603466 2.20E-61 dispersed
Sed14g0146 Sed-Chr14:1603466 Sed04g1554 Sed-Chr4:30305667 1.40E-17 dispersed
Sed14g0146 Sed-Chr14:1603466 Sed08g0201 Sed-Chr8:1141390 2.70E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g522 Blo04g00762 Blo16g00192 . . . Bpe13g00281 Bma06g00182 . . . . Cma11g00159 . . Sed14g0146 . Cpe04g01511 Bhi02g00339 Tan09g2144 Cmetu08g1425 . Hepe09g0133 . . Cla06g01603 Cam06g1777 Cec06g1828 Cco06g1836 Clacu06g1739 Cmu06g1684 Cre06g2500 . . Cone13ag0083 . Lsi02g00306 . Chy12g01330 . . . Bda11g01692 Bda14g00842 . Bpe15g00611 Bma03g00819 . . . Cmo11g00151 . . . . . . Bhi08g01403 . . . Hepe07g2288 . . . . . . . . . Lsi06g01481 Csa01g00220 Chy02g02513 Cme02g01899
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003368 1 3 1 1 1 3 2 3 2 3 1 1 1 0 1 1 3 1 2 3 1 1 1 4 2 1 1 1 0 1 47