Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0162 ATGAACCAGAAACTCAAATCCAAGAAGGCTGCTGCCAATCAGAAGCGCCTATCCGACGTCAAAGAAATTGAGCTTTTGGATTCATGGATTCAATCCCAGAAGCCGGAGTCAGGATCCAATCCCATGTCGCTCTCTCCGCCGCCCGCGAATGCACCCCGCATTGACAGGGCTACGTACCCGCGCTATGCCGGGGCCACGAGGTTCGATCAGTTGCCGCTCTCGAACAAGACCAAGGATGGGCTGCGGAAAGCTGGATTCCTTGACATGACTGACATTCAGAGGGCTTCTCTCCCCCACGCCCTTTGTGGTCGAGATATTCTTGGCGCTGCCAAAACTGGTTCTGGGAAGACGCTAGCTTTTCTCATTCCCGTTCTTGAAAAGTTGTATAAAGAAAGATGGGGTCCCGAGGATGGAGTAGGGAGCATAATAATATCTCCCACAAGAGAATTAGGAGCTCAGCTGTTTGATGTATTGAAAGATGTTGGGAAATTTCATAAATTCAGCGCTGGCCTTTTGATTGGTGGTCGTAAAGATGTTAACAGTGAAAAGGAGCGTGTGAATGAGTTGAACATTCTTGTTTGCACTCCTGGCAGGCTTCTTCAGCACATGGACGAGACTCCAAATTTTGATTGTTCACAGCTTCAGGTTTTAGTCCTTGATGAAGCAGATCGTATTCTTGATGTTGGATTTAAGAAGACTTTAAATGCGATTCTTTCACAGCTACCTAAGCACAGACAAACCTTTCTGTTTTCAGCAACTCAAACTAAGTCTGTTCAGGATCTTGCCAGACTCAGTTTGAAAGATCCCGAATACCTTAGTGTCCATGAAGAATCTGTGACTGCAACCCCCAATAGTTTAAGACAAACTGCCATGGTTGTTCCTCTTGAGCAGAAGCTAGACATGTTATGGAGCTTTATAAAGGCTCATCTTAATTCTAAGATTCTTGTGTTTCTCTCTAGCTGCAAACAGGTGAAATTTGTTTTTGAAACTTTCAAAAAGTTGCGCCCTGGAATCCCATTGAAGTGCCTCCATGGAAGGATGAAGCAGGACAAAAGGATGGGGATATATTCTGAGTTCTGTGAGAAGCGCTCAGTCCTCTTCTCCACAGATGTAGCCTCTAGAGGTCTTGATTTTAACAAGGCTGTTGACTGGGTTGTGCAGGTTGATTGCCCAGAAGATGTGGCTTCTTACATTCATAGAGTTGGTCGCACTGCCCGATACCATTCAGGTGGGAAATCAGTTTTATTTCTTATGCCCTCGGAGACGAAAATGTTGGAACGATTAGAATCTGCCAAAGTACCTATTCAGCTTATCAAGGCAAATACAAAAAGGATTCAACCAGTTTCTGGTTTGCTGTCAGCCTTGTTAGTCAAGTATCCCAATTTTCAGCAACTTGCTCAAAGGGCCTTTATTACATATCTTCGGTCAATTCATATCCAGAAGGAGAAGGAAATATTTGATGTTTTGAAACTATCAATTGATGGTTTTTCAGCTTCATTGGGGTTGCCAATGACTCCAAAAATTCGTTTCATTGATCAGAAAAGAAGGTCGCAGAAGATGTCTGCTAACTCTACCACTTTCCTTACGTTGGAACCGTCTGGTAATGAGAATGCTTTTAATACATCAGATGGAGAACTGGAGTATGGCGATTTTAAAGAACGCGACGAAGGACTTTTTCCTCCTATTGGCGATACCCCTTCTAGTGGAGTCGAAGATGGACTTTTTCCTCCTATTGACACCCCTTCTAGTGAAGTCGAAGATGTTCTGCCACCTACTCGGATTTTGAAGAAAAAGAAGATGAAGATCAATGTTCACAGGCCAGTTGGGACAAGAGTCAGTTTTGATGATGAGGGCAACCCACTTGCCCCTCTTGCTAAGCTAGCTGACATCAAGAGTAGCAATGAGACATTTGCAGTCGATGAAGATCTTAAAGCTGAGTTTTACAAAAAGAGGAGAGAAGAGTTAAAACAAGCTGACAAGGAAGATAAACTTCTCAATCGTAATCGTCTCAAAGAGAAGCGGAAGGAGAAGATGAACAAGATGAAGAAGAGGGCTGCGAAAGAAAGTCAGGACGAAGAGGATGTTTCCGGGTCTGAAGAAGAAAGACCTCAGAAAAGGTCTAAGAAATTTGTCGACAGTGATGACGACATCGATATCGACATCGACAATAAACCAGGAAACAAATTCAATACAGAGTCCATTTCGGTGGCAGATCAAGAGGAGCTAGCTCTCAAACTATTGAGTTCTCTGCGCCAATGA 2259 43.78 MNQKLKSKKAAANQKRLSDVKEIELLDSWIQSQKPESGSNPMSLSPPPANAPRIDRATYPRYAGATRFDQLPLSNKTKDGLRKAGFLDMTDIQRASLPHALCGRDILGAAKTGSGKTLAFLIPVLEKLYKERWGPEDGVGSIIISPTRELGAQLFDVLKDVGKFHKFSAGLLIGGRKDVNSEKERVNELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAILSQLPKHRQTFLFSATQTKSVQDLARLSLKDPEYLSVHEESVTATPNSLRQTAMVVPLEQKLDMLWSFIKAHLNSKILVFLSSCKQVKFVFETFKKLRPGIPLKCLHGRMKQDKRMGIYSEFCEKRSVLFSTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYHSGGKSVLFLMPSETKMLERLESAKVPIQLIKANTKRIQPVSGLLSALLVKYPNFQQLAQRAFITYLRSIHIQKEKEIFDVLKLSIDGFSASLGLPMTPKIRFIDQKRRSQKMSANSTTFLTLEPSGNENAFNTSDGELEYGDFKERDEGLFPPIGDTPSSGVEDGLFPPIDTPSSEVEDVLPPTRILKKKKMKINVHRPVGTRVSFDDEGNPLAPLAKLADIKSSNETFAVDEDLKAEFYKKRREELKQADKEDKLLNRNRLKEKRKEKMNKMKKRAAKESQDEEDVSGSEEERPQKRSKKFVDSDDDIDIDIDNKPGNKFNTESISVADQEELALKLLSSLRQ 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1867898 1880583 + Sed0021087.1 Sed14g0162 735880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0162 752 MobiDBLite consensus disorder prediction 682 725 - -
Sed14g0162 752 MobiDBLite consensus disorder prediction 657 672 - -
Sed14g0162 752 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 446 IPR001650 -
Sed14g0162 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 274 IPR027417 -
Sed14g0162 752 Gene3D - 54 278 IPR027417 -
Sed14g0162 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 423 IPR027417 -
Sed14g0162 752 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Sed14g0162 752 MobiDBLite consensus disorder prediction 657 734 - -
Sed14g0162 752 SMART helicmild6 325 408 IPR001650 -
Sed14g0162 752 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Sed14g0162 752 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Sed14g0162 752 CDD SF2_C_DEAD 286 417 - -
Sed14g0162 752 Gene3D - 285 527 IPR027417 -
Sed14g0162 752 Coils Coil 660 691 - -
Sed14g0162 752 PANTHER RNA HELICASE 66 685 - GO:0005634(PANTHER)|GO:0006364(PANTHER)
Sed14g0162 752 SMART DUF4217_3 447 510 IPR025313 -
Sed14g0162 752 Pfam Domain of unknown function (DUF4217) 460 508 IPR025313 -
Sed14g0162 752 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724(InterPro)
Sed14g0162 752 SMART ultradead3 85 289 IPR014001 -
Sed14g0162 752 CDD DEADc_DDX10 77 275 - -
Sed14g0162 752 MobiDBLite consensus disorder prediction 30 55 - -
Sed14g0162 752 Pfam DEAD/DEAH box helicase 90 261 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0162 K14776 - - csv:101213480 1230.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3907 Sed-Chr1:68279181 Sed14g0162 Sed-Chr14:1867898 1.10E-48 dispersed
Sed04g2925 Sed-Chr4:40884574 Sed14g0162 Sed-Chr14:1867898 6.50E-64 dispersed
Sed09g0512 Sed-Chr9:5081858 Sed14g0162 Sed-Chr14:1867898 3.00E-59 dispersed
Sed12g2471 Sed-Chr12:34303149 Sed14g0162 Sed-Chr14:1867898 3.80E-41 dispersed
Sed14g0162 Sed-Chr14:1867898 Sed02g1118 Sed-Chr2:48389139 1.00E-45 dispersed
Sed14g0162 Sed-Chr14:1867898 Sed01g1701 Sed-Chr1:12357306 1.40E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32