Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0175 ATGCCCTCCTTCCTTCTCTTCTTCTTCTTCTTCTTCTTCATTTCCTTTTCTTCCTCTCTCAACTCCGACGGCTTATCCCTTCTCGCCCTCAAAGCCGCCGTCGAAACCGACCCATCTCACGTTCTCGAGTCCTGGTCCGAGCTCGACCCGACCCCATGCCACTGGCCCGGAATCCTCTGCACCCACGACCGAGTCACCCAGATCTCCCTCCCCAACAAGGGCCTCACCGGCTACATCCCCTCCGAGCTCGGCCTCCTCGATTCCCTTCGCCGGATCATCCTCTCCGGCAACAATTTCTCCAAACCCATCCCTCCCCACCTCTACAACGCCACCAATCTCCTCGTTCTCGACCTTTCCCACAACTCCCTTTCCGGCCCGGTTCTCAACCAGATCGCCGACCTGACCCACCTTCGCCATCTCGATCTCTCCTCTAATTCTCTCAACGGCTCCCTCCCGGACCGGATTGTTGAGCTGAAACAACTCGTCGGGACTCTTAATTTGTCCTACAATGAGTTCTCCGGCGGGGTTCCGCCGTCGTTCGGGGAGCTTCCGTTGGTCGTGAATCTTGATCTCCGGCACAACAACCTCGCCGGGAAGATCCCGCAGGTGGGTTCGTTGCTGAATCAGGGTCCTACGGCGTTCTCCGGCAACCCGAGTCTCTGCGGGTTTCCGTTGCAGACGCCGTGTCCGGAAGCGCAGAACCCGAACGTGTTTCCTCAGAATCCGTTGAATCCGAAGCCGTTGAGCGGTGGGTTCCCGGCGGGGAGAGCGGCCGGCGGGAGTGGGGCCGCCGCGTCGGCGATGGTGGGGGTGGTGTTGTCGATACTGGCGGCGGCGGCGGTGGTGGTGTCGGTGACGGTGTGGTGGTATCGGAGGAAGGCGGCGGATGGGGAAGGGAGGGATTTGGAGGGCAAAACGGGAAAGGGGGGTTTGGAGGTGGAGAGTGGGAGGGAATTGGAAGGGCAAGATGGTAAATTCGCGGTGTTCGATGAAGGGATGAATTTGGAATTAGAGGATTTGTTGAGGGCATCGGCGTACGTGGTGGGGAAAAGTAGGAGTGGGATAGTGTATAGGGTAGTCGCCGGGCGGGGATCCGGTGCGGCCGCGAGTATTGTAGCCGTTAGGAGGCTCAACGACGGCGATGCCACGTTGTCGTTCAAGGATTTTGAGACTGAGATGGAATCCATTGGTAGGGTCCACCATCCCAACATCCTACGGTTGAGAGCTTACTACTACGCGAGTGATGAGAAATTACTGGTCACTGATTTCATCAAGAATGGAAGCTTGTACTCAGCCCTACATGGAGGCCCTTCCAATACTTTGTCACCTCTGCCATGGTCTGCAAGGTTAAAAATTGCCCAAGGAGCTGCTAGGGGTTTGGCGTACATTCACGAGTTTGGTACTCGGAAGTACGTACATGGAAACATTAGATCGACGAAAATCCTTCTCGATGATGACCTCGAGCCCTACATTTCAGGTTTTGGACTCACTCGTCTCAGTCAAGGATTGCCCAAGTTCACTACAACCTCATCGAAGAAGCTGAGCTCAAGCCAGAATATGATAGCCTCAATGATGGGGCCAAGCATTACAACTCCCTCAGCGATGTACTTAGCACCTGAGGTTCGGGAGTTTGGAGGGAAGCACACGCAGAAATGCGATGTCTACTCATTCGGTATTGTCCTGCTTGAACTTTTGAGCGGTAGGTTGCCGAACGCAGGATTGGAAAATGATGGGAAGGGGTTGGAATGTTTTGTGAGAAAGGTGTTTCAAGAAGAGCGCCCCTTGACTGAGATTATAGACCCTGCACTTGTGTCTGAGATTCATGCCAAGAAACAAGTGGTTTCTACGTTTCACATTGCACTGAACTGCACCGAGCTTGATCCCGAGCTTCGTCCGAGAATGAGAACAGTTTCAGAGAGTCTCGATCGAATCAAATCTCAGTGA 1944 54.63 MPSFLLFFFFFFFISFSSSLNSDGLSLLALKAAVETDPSHVLESWSELDPTPCHWPGILCTHDRVTQISLPNKGLTGYIPSELGLLDSLRRIILSGNNFSKPIPPHLYNATNLLVLDLSHNSLSGPVLNQIADLTHLRHLDLSSNSLNGSLPDRIVELKQLVGTLNLSYNEFSGGVPPSFGELPLVVNLDLRHNNLAGKIPQVGSLLNQGPTAFSGNPSLCGFPLQTPCPEAQNPNVFPQNPLNPKPLSGGFPAGRAAGGSGAAASAMVGVVLSILAAAAVVVSVTVWWYRRKAADGEGRDLEGKTGKGGLEVESGRELEGQDGKFAVFDEGMNLELEDLLRASAYVVGKSRSGIVYRVVAGRGSGAAASIVAVRRLNDGDATLSFKDFETEMESIGRVHHPNILRLRAYYYASDEKLLVTDFIKNGSLYSALHGGPSNTLSPLPWSARLKIAQGAARGLAYIHEFGTRKYVHGNIRSTKILLDDDLEPYISGFGLTRLSQGLPKFTTTSSKKLSSSQNMIASMMGPSITTPSAMYLAPEVREFGGKHTQKCDVYSFGIVLLELLSGRLPNAGLENDGKGLECFVRKVFQEERPLTEIIDPALVSEIHAKKQVVSTFHIALNCTELDPELRPRMRTVSESLDRIKSQ 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2025355 2030417 - Sed0000699.1 Sed14g0175 735893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0175 647 Pfam Leucine Rich Repeat 164 183 IPR001611 GO:0005515(InterPro)
Sed14g0175 647 FunFam Leucine-rich repeat receptor-like protein kinase 136 231 - -
Sed14g0175 647 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515(InterPro)
Sed14g0175 647 SUPERFAMILY Protein kinase-like (PK-like) 347 641 IPR011009 -
Sed14g0175 647 Gene3D Ribonuclease Inhibitor 25 132 IPR032675 -
Sed14g0175 647 Gene3D Ribonuclease Inhibitor 133 231 IPR032675 -
Sed14g0175 647 ProSiteProfiles Protein kinase domain profile. 342 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0175 647 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 645 IPR046959 -
Sed14g0175 647 Pfam Protein tyrosine and serine/threonine kinase 348 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed14g0175 647 Gene3D Transferase(Phosphotransferase) domain 1 424 647 - -
Sed14g0175 647 PRINTS Leucine-rich repeat signature 113 126 - -
Sed14g0175 647 PRINTS Leucine-rich repeat signature 134 147 - -
Sed14g0175 647 Pfam Leucine rich repeat N-terminal domain 20 61 IPR013210 -
Sed14g0175 647 FunFam Leucine-rich repeat receptor-like kinase 25 130 - -
Sed14g0175 647 Gene3D Phosphorylase Kinase; domain 1 325 423 - -
Sed14g0175 647 SUPERFAMILY L domain-like 22 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0474 Sed-Chr13:3219977 Sed14g0175 Sed-Chr14:2025355 4.10E-42 dispersed
Sed14g0175 Sed-Chr14:2025355 Sed06g1908 Sed-Chr6:43437395 1.30E-49 dispersed
Sed14g0175 Sed-Chr14:2025355 Sed06g1950 Sed-Chr6:43694452 3.00E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80132 PF07714 PK_Tyr_Ser-Thr 2.30E-25 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0175 - - - 0.0