Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0189 ATGGCTACCCTTTTCACATCACCATTGTTGCTCTCTTTAGCCTTTGGTTTCTTCATTTTGGGTTCTTCTTTGTCTGAGGAATCAACCCTTTTGACCTTCAAAGCTTCCATTGAAGATTCAACAAGATCTCTCTCCAACTGGGTTTCTTCTTCTTCTTCTTCGCCGACCCATTTCTGTAACTGGACTGGAATTTCTTGTGTGGGTTCTTCTTCTTTTTCGGTTTCCGCCATTGATCTTCAGGGTCTGAACCTTTCTGGTGAAATTTCATCTTCCATTTGTGAGCTCCCTCGTTTGGCTCATCTCAATCTTGCGGATAATCGGTTCAATCACCCGATTCCTCTTCATCTCTCGCAGTGCAGATCGTTGGAGACTTTGAATCTGAGCAATAATCTCATTTGGGGGACGATACCGGATCAGATTTCTCTGTTTGGTTCTTTGAGAGTTCTTGATTTTGGGAAGAATCATATTGAAGGGAAGATTCCTGATGGCATTGGGGATTTGAAGAATCTTCGAGTTTTGAATCTGAGAAGCAACTTGATTTCTGGTAGAGTTTCTTCTGTTGTTTTTCATAATCTTACTGAACTTCTTGTTGTTGATTTGTCTGAAAATTATTATTTGTTGAGTGAAATTCCTAGTGAGATTGGGAAGCTTGAGAAGCTTCAGGAGCTATGGTTTCAAAGCTCTGGTTTCTTTGGGGAAATCCCTTCTTCTTTGTTGGGTTTGAAGAGTTTGACTGTTTTGGATCTTTCTAAGAACAATCTCACTGGGAAAGTTCCTGAAATGTTGGGTTCTTCTCTGAAGAATTTGGTGTCTTTTGATGTTTCTGAGAATAAACTTGTGGGGTCTTTCCCAAATGGGATTTGTAGTGGAAAAGGTCTTGTTAGTATTAGTGTTCATACCAATTTTTTTACTGGGTCTTTGCCTAATTCATTGAATCAATGTTTGAATCTTGAGAGGTTTCAAGTTCAGAACAATGGGTTTTTTGGGGATTTTCCTAAACCATTGTGGTCATTGCCAAAGATTAAGCTCATCAGAGCTGAAAACAATGGCTTCTCTGGTGAAATTCCAGAGTCTATATCAATGGGTGCTTTTCTTGAGCAAGTTCAGCTTGATAACAACAGTTTTACGAGTAAGATACCCCGTAGCCTTGGTTCGATCCAGAGTTTATACCGATTCTCTGCTTCGCTCAACCACTTATATGGTGAATTGCCTCCAAACTTCTGTGATTCGCCATTGATGAGTATCATCAATCTGTCCCATAATTCTGTTTCGGGACGGATTCCCGAGCTCAAAAACTGCAAGAAACTTGTCTCTTTGTCCTTGGCAGGCAATAGCCTTACCGGAGAAATACCTACTTCCCTTGCTGATCTACCGGTGTTAACTTATCTTGATCTTTCTGATAACAATCTCACTGGTTCGATCCCTCAAGAACTAGAAAACTTAAAGCTGGCACTCTTTAATGTTTCGTTCAATCGACTATCAGGCGCTGTTCCGTTCTCGTTGATTTCAGGGCTGCCAGCTTCATTTTTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGGAGACTCCTTGTTCTCAAGGCCAACAAACAGACCATATGTCAGGATTTAACAAAATGACATGTGCCCTCATCTCTATAGCTTGTGTTTTAGGAGTTATGAGCTTAGCTGCCGGGTTCTTTGTGTATTACCGATCCATCAAACCGAAATCACGTGTCGATAAGTGGCACTCGGTCTACTTCTATCCTCTTAGAATCAGTGAACATGAGTTTATCATGGGGATGAATGAGAAAACTGCACAAGGATGTGGAGGAGCGTTTGGCCAAGTGTTCATTTTGAGCTTACCGAGCCGTGAACTGATAGCCGTAAAGAAACTGGTTAACTTCGGGAGTCGCTCGTGGAAATCATTGAAAGCCGAGGTCAAGACATTGGCCAAGATCAGGCACAAGAACATCATCAAAATTTTGGGGTTTTGCCACTCTGATGATGCCATTTTTCTGATCTATGAATTCTTACACAAAGGAAGCTTGGCTGACTTGATATGTGGGAATGATTCTTGTCTGAATTGGAATTTGAGACTAAGAATCGCCATTGAGGTTGCTCAAGGGCTAACTTACATTCACAAGGACTATGTCCCACATTTACTTCATCGAAACATCAAGTCGTCGAACATTCTATTGGACGCTGACTTTGTCCCGAAACTCACGGATTTTGCTCTTAACCATATCGTTGGAGAGTCAGCATTTCACTCAACTGTGGCTTCAGAATCTGCTCATTCTTGCTATATTGCACCAGAGTACAAATACAACAAAAAGGCAACAGAACAAATGGATGTGTACAGCTTTGGTGTAGTGTTGCTTGAACTGGTGACGGGGAGACAAGCCGAGCGATCGGAATCAACTGACTCTCTCGACGTCGTCCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTTCCCAAGTCCTGGACCCGAGCATCTCAAAGCAATCCCAACGACAGATGCTGGAAGCCCTGGACATTGCCCTCCAATGCACTTCCATGTTGCCCGAAAAGCGACCATCTATGCTGGAAGTCGCCAAGGCACTTCAACTGATTGACTCGACGACAAACCTCCGTGATGCAGCCTCTACATCTGCGGAGGATGGTTCAGTTCCAAGCTGA 2667 42.82 MATLFTSPLLLSLAFGFFILGSSLSEESTLLTFKASIEDSTRSLSNWVSSSSSSPTHFCNWTGISCVGSSSFSVSAIDLQGLNLSGEISSSICELPRLAHLNLADNRFNHPIPLHLSQCRSLETLNLSNNLIWGTIPDQISLFGSLRVLDFGKNHIEGKIPDGIGDLKNLRVLNLRSNLISGRVSSVVFHNLTELLVVDLSENYYLLSEIPSEIGKLEKLQELWFQSSGFFGEIPSSLLGLKSLTVLDLSKNNLTGKVPEMLGSSLKNLVSFDVSENKLVGSFPNGICSGKGLVSISVHTNFFTGSLPNSLNQCLNLERFQVQNNGFFGDFPKPLWSLPKIKLIRAENNGFSGEIPESISMGAFLEQVQLDNNSFTSKIPRSLGSIQSLYRFSASLNHLYGELPPNFCDSPLMSIINLSHNSVSGRIPELKNCKKLVSLSLAGNSLTGEIPTSLADLPVLTYLDLSDNNLTGSIPQELENLKLALFNVSFNRLSGAVPFSLISGLPASFLQGNPDLCGPGLETPCSQGQQTDHMSGFNKMTCALISIACVLGVMSLAAGFFVYYRSIKPKSRVDKWHSVYFYPLRISEHEFIMGMNEKTAQGCGGAFGQVFILSLPSRELIAVKKLVNFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCHSDDAIFLIYEFLHKGSLADLICGNDSCLNWNLRLRIAIEVAQGLTYIHKDYVPHLLHRNIKSSNILLDADFVPKLTDFALNHIVGESAFHSTVASESAHSCYIAPEYKYNKKATEQMDVYSFGVVLLELVTGRQAERSESTDSLDVVQWVRRKVNIANGASQVLDPSISKQSQRQMLEALDIALQCTSMLPEKRPSMLEVAKALQLIDSTTNLRDAASTSAEDGSVPS 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2101758 2106965 - Sed0008173.1 Sed14g0189 735907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0189 888 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515(InterPro)
Sed14g0189 888 SUPERFAMILY Protein kinase-like (PK-like) 605 870 IPR011009 -
Sed14g0189 888 Gene3D Ribonuclease Inhibitor 264 534 IPR032675 -
Sed14g0189 888 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 586 671 - -
Sed14g0189 888 Gene3D Ribonuclease Inhibitor 23 186 IPR032675 -
Sed14g0189 888 FunFam Leucine-rich repeat family protein 25 185 - -
Sed14g0189 888 Gene3D Ribonuclease Inhibitor 187 263 IPR032675 -
Sed14g0189 888 SMART LRR_typ_2 266 290 IPR003591 -
Sed14g0189 888 SMART LRR_typ_2 457 481 IPR003591 -
Sed14g0189 888 SMART LRR_typ_2 192 217 IPR003591 -
Sed14g0189 888 SMART LRR_typ_2 95 119 IPR003591 -
Sed14g0189 888 SMART LRR_typ_2 120 143 IPR003591 -
Sed14g0189 888 SMART LRR_typ_2 167 191 IPR003591 -
Sed14g0189 888 SMART LRR_typ_2 241 264 IPR003591 -
Sed14g0189 888 ProSiteProfiles Protein kinase domain profile. 596 867 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0189 888 ProSiteProfiles Leucine-rich repeat profile. 459 482 IPR001611 GO:0005515(InterPro)
Sed14g0189 888 SUPERFAMILY L domain-like 207 526 - -
Sed14g0189 888 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Sed14g0189 888 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515(InterPro)
Sed14g0189 888 Pfam Leucine rich repeat 435 493 IPR001611 GO:0005515(InterPro)
Sed14g0189 888 Gene3D Phosphorylase Kinase; domain 1 603 672 - -
Sed14g0189 888 Gene3D Transferase(Phosphotransferase) domain 1 673 884 - -
Sed14g0189 888 SUPERFAMILY L domain-like 25 287 - -
Sed14g0189 888 Pfam Leucine Rich Repeat 243 264 IPR001611 GO:0005515(InterPro)
Sed14g0189 888 Pfam Protein tyrosine and serine/threonine kinase 605 863 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed14g0189 888 PRINTS Leucine-rich repeat signature 244 257 - -
Sed14g0189 888 PRINTS Leucine-rich repeat signature 457 470 - -
Sed14g0189 888 PANTHER UNNAMED PRODUCT 111 857 - -
Sed14g0189 888 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 265 528 - -
Sed14g0189 888 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 672 872 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g0189 Sed-Chr14:2101758 Sed08g2241 Sed-Chr8:36104350 4.80E-58 dispersed
Sed14g0189 Sed-Chr14:2101758 Sed14g1490 Sed-Chr14:23242860 7.40E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80133 PF00069 Pkinase 1.10E-37 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0189 - - - 0.0