Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0195 ATGGAAGACCAATGTTCCAACTCATTGGCAAGTGTTATAAATTTCAACTCTCTCCACCATCATTTTCCACCCTCACAACCTTCTCCGTTTCCACCACAGGTGAATATGTCTCTGAATTGCTTCTCTTATCCCTACCCGAACCCGCCTCCACCATCATCGCCACCACTCCGTGAGGCTCTCCCGCTTTTAGGGCTAATATCTCTGCCCGAGCAACAACAGGAGCAAGAGACAGAAGACGGGGGAGGCGGTGAAGGCAATGATGGGTCAGTGACCGTGGCGTTGCACATAGGGCTGCCGAGCCCTAGCGCGGCCGAGATAGCTTCGGTGATGTGTGGTTCTTCATCTGAGATTGATCATCATATGGGTGATGGAGATCATAGAAATAACAATAATAATCTTGATGATTTTGGGCAATCTACCAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTTCTCAAATCCTCATTGGTCCAACTCAATTTTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGACATGGCTCTCAGTACAGAAAGGGCCCCGAGTCGCTCCGTGGCACGCAGCCAACGGGCATGCTAAGGCTGCCTTGCTACTGCTGCGCACCAGGGTGTCGCAACAACATCGACCACCCTCGGGCCAAGCCACTGAAGGACTTCAGAACCCTGCAAACACATTACAAGCGCAAGCATGGACTAAAGCCATTCATGTGCCGCAAGTGCGGTAAGGCATTTGCCGTGCGTGGGGACTGGCGAACACACGAGAAGAATTGTGGCAAGCTTTGGTACTGCATTTGTGGCTCTGATTTCAAGCACAAGCGCTCTCTCAAGGACCATGTCAAGGCTTTCGGTAACGAGCATGCTGCGTATGGTGGTAGCGGGATCGATGGGTTCGGAGACGAGGAGGATGAGCCTGCTTCTGAAGTCGAGCAGGATAACGATGAGTGA 981 51.07 MEDQCSNSLASVINFNSLHHHFPPSQPSPFPPQVNMSLNCFSYPYPNPPPPSSPPLREALPLLGLISLPEQQQEQETEDGGGGEGNDGSVTVALHIGLPSPSAAEIASVMCGSSSEIDHHMGDGDHRNNNNNLDDFGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNEHAAYGGSGIDGFGDEEDEPASEVEQDNDE 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2209686 2213767 - Sed0025190.1 Sed14g0195 735913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0195 326 Gene3D Classic Zinc Finger 224 301 - -
Sed14g0195 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 247 267 IPR013087 -
Sed14g0195 326 MobiDBLite consensus disorder prediction 308 326 - -
Sed14g0195 326 MobiDBLite consensus disorder prediction 71 90 - -
Sed14g0195 326 Gene3D Classic Zinc Finger 162 185 - -
Sed14g0195 326 Pfam Zinc finger, C2H2 type 163 182 IPR013087 -
Sed14g0195 326 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Sed14g0195 326 PANTHER ZINC FINGER PROTEIN WIP2 39 324 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Sed14g0195 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Sed14g0195 326 FunFam zinc finger protein WIP2-like 162 185 - -
Sed14g0195 326 SMART c2h2final6 163 185 IPR013087 -
Sed14g0195 326 SMART c2h2final6 247 267 IPR013087 -
Sed14g0195 326 MobiDBLite consensus disorder prediction 301 326 - -
Sed14g0195 326 SUPERFAMILY beta-beta-alpha zinc fingers 159 185 IPR036236 -
Sed14g0195 326 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 246 270 - -
Sed14g0195 326 SUPERFAMILY beta-beta-alpha zinc fingers 232 267 IPR036236 -
Sed14g0195 326 FunFam Zinc finger protein WIP2 216 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3304 Sed-Chr1:61376072 Sed14g0195 Sed-Chr14:2209686 1.10E-98 dispersed
Sed09g1390 Sed-Chr9:37826744 Sed14g0195 Sed-Chr14:2209686 3.00E-91 dispersed
Sed12g1232 Sed-Chr12:8757416 Sed14g0195 Sed-Chr14:2209686 2.90E-107 dispersed
Sed14g0195 Sed-Chr14:2209686 Sed05g1132 Sed-Chr5:11349122 5.40E-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40522 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0195 - - - 0.0