Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0195 | ATGGAAGACCAATGTTCCAACTCATTGGCAAGTGTTATAAATTTCAACTCTCTCCACCATCATTTTCCACCCTCACAACCTTCTCCGTTTCCACCACAGGTGAATATGTCTCTGAATTGCTTCTCTTATCCCTACCCGAACCCGCCTCCACCATCATCGCCACCACTCCGTGAGGCTCTCCCGCTTTTAGGGCTAATATCTCTGCCCGAGCAACAACAGGAGCAAGAGACAGAAGACGGGGGAGGCGGTGAAGGCAATGATGGGTCAGTGACCGTGGCGTTGCACATAGGGCTGCCGAGCCCTAGCGCGGCCGAGATAGCTTCGGTGATGTGTGGTTCTTCATCTGAGATTGATCATCATATGGGTGATGGAGATCATAGAAATAACAATAATAATCTTGATGATTTTGGGCAATCTACCAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTTCTCAAATCCTCATTGGTCCAACTCAATTTTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGACATGGCTCTCAGTACAGAAAGGGCCCCGAGTCGCTCCGTGGCACGCAGCCAACGGGCATGCTAAGGCTGCCTTGCTACTGCTGCGCACCAGGGTGTCGCAACAACATCGACCACCCTCGGGCCAAGCCACTGAAGGACTTCAGAACCCTGCAAACACATTACAAGCGCAAGCATGGACTAAAGCCATTCATGTGCCGCAAGTGCGGTAAGGCATTTGCCGTGCGTGGGGACTGGCGAACACACGAGAAGAATTGTGGCAAGCTTTGGTACTGCATTTGTGGCTCTGATTTCAAGCACAAGCGCTCTCTCAAGGACCATGTCAAGGCTTTCGGTAACGAGCATGCTGCGTATGGTGGTAGCGGGATCGATGGGTTCGGAGACGAGGAGGATGAGCCTGCTTCTGAAGTCGAGCAGGATAACGATGAGTGA | 981 | 51.07 | MEDQCSNSLASVINFNSLHHHFPPSQPSPFPPQVNMSLNCFSYPYPNPPPPSSPPLREALPLLGLISLPEQQQEQETEDGGGGEGNDGSVTVALHIGLPSPSAAEIASVMCGSSSEIDHHMGDGDHRNNNNNLDDFGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNEHAAYGGSGIDGFGDEEDEPASEVEQDNDE | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 2209686 | 2213767 | - | Sed0025190.1 | Sed14g0195 | 735913 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0195 | 326 | Gene3D | Classic Zinc Finger | 224 | 301 | - | - | |
Sed14g0195 | 326 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 247 | 267 | IPR013087 | - | |
Sed14g0195 | 326 | MobiDBLite | consensus disorder prediction | 308 | 326 | - | - | |
Sed14g0195 | 326 | MobiDBLite | consensus disorder prediction | 71 | 90 | - | - | |
Sed14g0195 | 326 | Gene3D | Classic Zinc Finger | 162 | 185 | - | - | |
Sed14g0195 | 326 | Pfam | Zinc finger, C2H2 type | 163 | 182 | IPR013087 | - | |
Sed14g0195 | 326 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 165 | 185 | IPR013087 | - | |
Sed14g0195 | 326 | PANTHER | ZINC FINGER PROTEIN WIP2 | 39 | 324 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Sed14g0195 | 326 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 163 | 190 | IPR013087 | - | |
Sed14g0195 | 326 | FunFam | zinc finger protein WIP2-like | 162 | 185 | - | - | |
Sed14g0195 | 326 | SMART | c2h2final6 | 163 | 185 | IPR013087 | - | |
Sed14g0195 | 326 | SMART | c2h2final6 | 247 | 267 | IPR013087 | - | |
Sed14g0195 | 326 | MobiDBLite | consensus disorder prediction | 301 | 326 | - | - | |
Sed14g0195 | 326 | SUPERFAMILY | beta-beta-alpha zinc fingers | 159 | 185 | IPR036236 | - | |
Sed14g0195 | 326 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 246 | 270 | - | - | |
Sed14g0195 | 326 | SUPERFAMILY | beta-beta-alpha zinc fingers | 232 | 267 | IPR036236 | - | |
Sed14g0195 | 326 | FunFam | Zinc finger protein WIP2 | 216 | 298 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3304 | Sed-Chr1:61376072 | Sed14g0195 | Sed-Chr14:2209686 | 1.10E-98 | dispersed | |
Sed09g1390 | Sed-Chr9:37826744 | Sed14g0195 | Sed-Chr14:2209686 | 3.00E-91 | dispersed | |
Sed12g1232 | Sed-Chr12:8757416 | Sed14g0195 | Sed-Chr14:2209686 | 2.90E-107 | dispersed | |
Sed14g0195 | Sed-Chr14:2209686 | Sed05g1132 | Sed-Chr5:11349122 | 5.40E-100 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40522 | None | None | None | None | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0195 | - | - | - | 0.0 |