Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0200 ATGGCTCCTGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAAGTCATGACATAACTATGTCTAAAACAGAGAATAATTCTACATCTTCAAAAGTCCTACTTGGTTTGGGTGGTAAAGTTGGAGTTTATTCAACCAATGGTGTCCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCAAATGGCCACACATTGTGTTCGAACTGCAAGATCAGAGTTAGCAACTCTTGCCCGGCCTGTCGTCACGAACTTGGAAATATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTTGAAATTCCCTGCAGATACCAGAATTTGGGTTGCCAAGATATTTTTCCTTACTACAGTAAGCTTAAGCATGAGCAACATTGCCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTTACGGGCGACATCCCATCTCTTGTTACACATCTCAAAGATGATCACAAGGTTGACATGCATGACGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACATGAAGTCGAAAATGCCACATGGATGCTGACGGTTTTCAACTGCTTTGGAAGACAGTTCTGTTTGCATTTCGAGGCCTTCCAGCTCGGAATGGCTCCTGTTTACATGGCCTTTTTACGATTCATGGGTGATGACAATGAAGCTAAGAAGTTCAGTTACAGTTTGGAAGTGGGCGGCAATGGGCGTAAACTGATATGGCAAGGAATTCCGAGGGGCATTCGTGACAGTCACCGAAAAGTTCGTGACAGTCAAGACGGTCTCATTATTCAAAGAAACCTGGCACTGTATTTTTCAGGAGGGGAAAGGAAAGAGCTGAAGCTGAGGATCACGGGTCGAATATGGAAAGAAGAATGA 924 44.7 MAPGSSTCKEVVDSHPSVSSHDITMSKTENNSTSSKVLLGLGGKVGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPACRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVTHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERKELKLRITGRIWKEE 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2257771 2262235 + Sed0018897.2 Sed14g0200 735918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0200 307 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 300 IPR008974 GO:0005515(InterPro)
Sed14g0200 307 MobiDBLite consensus disorder prediction 1 29 - -
Sed14g0200 307 Pfam Sina, TRAF-like domain 203 300 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed14g0200 307 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 59 94 IPR049548 -
Sed14g0200 307 MobiDBLite consensus disorder prediction 10 29 - -
Sed14g0200 307 Pfam Sina, zinc finger 108 183 - -
Sed14g0200 307 CDD Sina 173 301 - -
Sed14g0200 307 SUPERFAMILY TRAF domain-like 112 304 - -
Sed14g0200 307 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Sed14g0200 307 SUPERFAMILY RING/U-box 53 100 - -
Sed14g0200 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 165 IPR013083 -
Sed14g0200 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 110 - -
Sed14g0200 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 111 IPR013083 -
Sed14g0200 307 CDD RING-HC_SIAHs 57 95 - -
Sed14g0200 307 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 33 302 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed14g0200 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 168 300 - -
Sed14g0200 307 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270(InterPro)
Sed14g0200 307 FunFam E3 ubiquitin-protein ligase SINAT3 111 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2288 Sed-Chr3:17378596 Sed14g0200 Sed-Chr14:2257771 1.30E-180 dispersed
Sed14g0199 Sed-Chr14:2257595 Sed14g0200 Sed-Chr14:2257771 2.10E-186 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0200 K04506 - rcu:8260973 571.237