Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0200 | ATGGCTCCTGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAAGTCATGACATAACTATGTCTAAAACAGAGAATAATTCTACATCTTCAAAAGTCCTACTTGGTTTGGGTGGTAAAGTTGGAGTTTATTCAACCAATGGTGTCCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCAAATGGCCACACATTGTGTTCGAACTGCAAGATCAGAGTTAGCAACTCTTGCCCGGCCTGTCGTCACGAACTTGGAAATATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTTGAAATTCCCTGCAGATACCAGAATTTGGGTTGCCAAGATATTTTTCCTTACTACAGTAAGCTTAAGCATGAGCAACATTGCCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTTACGGGCGACATCCCATCTCTTGTTACACATCTCAAAGATGATCACAAGGTTGACATGCATGACGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACATGAAGTCGAAAATGCCACATGGATGCTGACGGTTTTCAACTGCTTTGGAAGACAGTTCTGTTTGCATTTCGAGGCCTTCCAGCTCGGAATGGCTCCTGTTTACATGGCCTTTTTACGATTCATGGGTGATGACAATGAAGCTAAGAAGTTCAGTTACAGTTTGGAAGTGGGCGGCAATGGGCGTAAACTGATATGGCAAGGAATTCCGAGGGGCATTCGTGACAGTCACCGAAAAGTTCGTGACAGTCAAGACGGTCTCATTATTCAAAGAAACCTGGCACTGTATTTTTCAGGAGGGGAAAGGAAAGAGCTGAAGCTGAGGATCACGGGTCGAATATGGAAAGAAGAATGA | 924 | 44.7 | MAPGSSTCKEVVDSHPSVSSHDITMSKTENNSTSSKVLLGLGGKVGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPACRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVTHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERKELKLRITGRIWKEE | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 2257771 | 2262235 | + | Sed0018897.2 | Sed14g0200 | 735918 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0200 | 307 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 300 | IPR008974 | GO:0005515(InterPro) | |
Sed14g0200 | 307 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Sed14g0200 | 307 | Pfam | Sina, TRAF-like domain | 203 | 300 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Sed14g0200 | 307 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 59 | 94 | IPR049548 | - | |
Sed14g0200 | 307 | MobiDBLite | consensus disorder prediction | 10 | 29 | - | - | |
Sed14g0200 | 307 | Pfam | Sina, zinc finger | 108 | 183 | - | - | |
Sed14g0200 | 307 | CDD | Sina | 173 | 301 | - | - | |
Sed14g0200 | 307 | SUPERFAMILY | TRAF domain-like | 112 | 304 | - | - | |
Sed14g0200 | 307 | ProSiteProfiles | Zinc finger RING-type profile. | 59 | 95 | IPR001841 | - | |
Sed14g0200 | 307 | SUPERFAMILY | RING/U-box | 53 | 100 | - | - | |
Sed14g0200 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 165 | IPR013083 | - | |
Sed14g0200 | 307 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 13 | 110 | - | - | |
Sed14g0200 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 111 | IPR013083 | - | |
Sed14g0200 | 307 | CDD | RING-HC_SIAHs | 57 | 95 | - | - | |
Sed14g0200 | 307 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 33 | 302 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Sed14g0200 | 307 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 168 | 300 | - | - | |
Sed14g0200 | 307 | ProSiteProfiles | Zinc finger SIAH-type profile. | 112 | 172 | IPR013010 | GO:0008270(InterPro) | |
Sed14g0200 | 307 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 111 | 167 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2288 | Sed-Chr3:17378596 | Sed14g0200 | Sed-Chr14:2257771 | 1.30E-180 | dispersed | |
Sed14g0199 | Sed-Chr14:2257595 | Sed14g0200 | Sed-Chr14:2257771 | 2.10E-186 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0200 | K04506 | - | rcu:8260973 | 571.237 |