Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0223 ATGGAGCCCCATCACCTCCCAAACTCCTATTCTCATCTCCAACTCTCCGCCATGGAAGATCACGATATCCTTCACCGTCACGACGTTCACGAGCTCGATTCTATTTGGCCGTCGTTCTTGCCTTTTCAACCTCCCGATCCTCATCATCAACTCCCCACCTCTTCCACCCCATTGCTGATCGACTACGCTACTCCAAGTTCTGGGGCAGGTGATGATCAAGAAGAGCCTGAAGAAGAGCTCGGCGCCATGAAGGAGATGATGTACAAGATAGCTGCGATGCAGCCGGTGGACATCGACCCTTCAACTATCCGGAAGCCCAAGCGACGAAATGTTCGAATTAGCGACGACCCGCAAAGCATCGCCGCACGTCTTCGACGAGAGAGGATCAGCGAGAAGATCCGAATTCTTCAAAGGCTTGTGCCCGGAGGAACAAAGATGGACACAGCTTCAATGCTAGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCCGGTTGCTGCAGTCAAGTCAGCCGCCACCGGCGAGCAGTGGCGGCGCCGCCGCCGTTGGAGGGTGGCCGTTTACATTCCATAAGGGCAATGATTAA 594 53.37 MEPHHLPNSYSHLQLSAMEDHDILHRHDVHELDSIWPSFLPFQPPDPHHQLPTSSTPLLIDYATPSSGAGDDQEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPPASSGGAAAVGGWPFTFHKGND 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2454099 2454986 + Sed0007275.1 Sed14g0223 735941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0223 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 171 IPR036638 GO:0046983(InterPro)
Sed14g0223 197 MobiDBLite consensus disorder prediction 46 79 - -
Sed14g0223 197 FunFam BHLH transcription factor 116 178 - -
Sed14g0223 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983(InterPro)
Sed14g0223 197 Gene3D - 116 174 IPR036638 GO:0046983(InterPro)
Sed14g0223 197 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 24 174 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0223 197 SMART finulus 119 168 IPR011598 GO:0046983(InterPro)
Sed14g0223 197 CDD bHLH_AtIND_like 114 171 - -
Sed14g0223 197 Pfam Helix-loop-helix DNA-binding domain 122 163 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3306 Sed-Chr4:43362504 Sed14g0223 Sed-Chr14:2454099 2.10E-07 dispersed
Sed06g0110 Sed-Chr6:688810 Sed14g0223 Sed-Chr14:2454099 7.70E-25 dispersed
Sed06g2198 Sed-Chr6:45701422 Sed14g0223 Sed-Chr14:2454099 4.30E-09 dispersed
Sed07g1366 Sed-Chr7:10381042 Sed14g0223 Sed-Chr14:2454099 2.50E-29 dispersed
Sed13g1761 Sed-Chr13:22619005 Sed14g0223 Sed-Chr14:2454099 2.40E-32 dispersed
Sed14g0223 Sed-Chr14:2454099 Sed14g0619 Sed-Chr14:6255720 2.70E-17 dispersed
Sed14g0223 Sed-Chr14:2454099 Sed10g1240 Sed-Chr10:26677131 1.80E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40529 PF00010 HLH 1.10E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0223 - - - 0.0