Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0260 ATGGCAATAGACCAGGGCGAGCTTAGCACTGAGCAGGTTCTTACAAAGGACATTCCATGGGAGACATACATGTCTACTAAACTTATCAATGGAACAAGCCTTCAGCTTTTAAGGCGTTATGATAACAGACCAGAGAGTTACAGGGCCCAATTGTTGGATGATGATGGTCCAGCTTATGTTAAGGTATTTGTTAGCATTTTACGTGATATATTTAAGGAAGAGACAGTGGAATATGTTCTAGCATTAATCGATGAGATGCTTACAGCAAACCCGAAAAGAGCAAGATTGTTCCATGATCATTCTCTTGCAAGCGAAGATGCTTATGAACCTTTCCTAAGATTGCTTTGGAAGGGCAATTGGTTCGTACAGGAGAAGAGCTGTAAAATACTTGCTCTGATTGTGAGTGCTAGAACAAAAACTCATGAAGGAAGTTTTGCGAATGGTGATGCCTCAAACTCCAAGAAGAAACTTACTACCGTAGATGATGTTTTGGATGGACTTGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCGCATCCTAGTCGTGCGGTACAGACTTCTATCAACTGCCTTGCAACACTGCTGAAGGAACCAAAGGTCAGATCCTCCTTTGTCCAGGCTGATGGAGTGAAATTGCTCGTTCCGTTGATTTCTCCTGCATCAACTCAACAATCTATTCAGCTTCTATACGAAACATGTCTTTGTGTTTGGCTTTTATCATATTATGAGCCGGCAGTTGAATTCTTGGCCACTTCTAGAACCCTTCCAAGACTCGTCGATGTTGTCAAGAGTTCCACAAAAGAAAAGGTTGTCCGAGTTGTTATTTTGATCTTGAGGAACGTACTCTACAAGGGGACATTTGGAGCTCAAATGGTGGGTCTCGGACTACCCCAAATTGTTCAAAGTTTGAAATCCCAAGCATGGAGTGATGAGGACCTTTTGGAGGCTTTGAGTCAACTAGAAGATGGGCTGAAAGATAGTATCAAGAAACTAAGTTCTTTTGACAAGTATAAGCAAGAAGTTCTTCTTGGTCATCTTGACTGGTCTCCTATGCACAAAGATGTAAATTTCTGGCGTGAAAATATCGCAAGCTTCGAAGAGAACGACTTCAAGATATTGAGGGTCCTTATCACCATTCTGGACACTTCAAGTGATCCAAGGGCTCTGGCAGTTGCTTGTTTTGATCTTTCCCAGTTTGTTCAGAACCATCCAGCTGGGAGAGTTATAGTGACAGACCTCAAAGCCAAGGAAAGAGTGATGAAACTAATGAACCATGATAATGCTGAAGTTACCAAATATGCCCTTCTCTGCATTCAAAGGCTCTTTCTTGGTGCTAAATATGCCAGCTTTCTGCAGGTTTAA 1365 41.98 MAIDQGELSTEQVLTKDIPWETYMSTKLINGTSLQLLRRYDNRPESYRAQLLDDDGPAYVKVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDHSLASEDAYEPFLRLLWKGNWFVQEKSCKILALIVSARTKTHEGSFANGDASNSKKKLTTVDDVLDGLVKWLCAQLKNPSHPSRAVQTSINCLATLLKEPKVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCVWLLSYYEPAVEFLATSRTLPRLVDVVKSSTKEKVVRVVILILRNVLYKGTFGAQMVGLGLPQIVQSLKSQAWSDEDLLEALSQLEDGLKDSIKKLSSFDKYKQEVLLGHLDWSPMHKDVNFWRENIASFEENDFKILRVLITILDTSSDPRALAVACFDLSQFVQNHPAGRVIVTDLKAKERVMKLMNHDNAEVTKYALLCIQRLFLGAKYASFLQV 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2757272 2764268 + Sed0014541.1 Sed14g0260 735978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0260 454 CDD VATPase_H 4 448 - -
Sed14g0260 454 Gene3D - 7 333 IPR011989 -
Sed14g0260 454 SUPERFAMILY ARM repeat 10 444 IPR016024 -
Sed14g0260 454 Pfam V-ATPase subunit H 9 325 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed14g0260 454 FunFam V-type proton ATPase subunit H 345 446 - -
Sed14g0260 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 2 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed14g0260 454 Pfam V-ATPase subunit H 331 443 IPR011987 GO:0000221(InterPro)|GO:1902600(InterPro)
Sed14g0260 454 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 400 407 IPR018506 GO:0020037(InterPro)
Sed14g0260 454 PIRSF V-ATP_synth_H 4 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed14g0260 454 Gene3D - 345 446 IPR038497 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g3114 Sed-Chr3:47868056 Sed14g0260 Sed-Chr14:2757272 1.00E-242 dispersed
Sed03g3115 Sed-Chr3:47868056 Sed14g0260 Sed-Chr14:2757272 1.00E-242 dispersed
Sed14g0260 Sed-Chr14:2757272 Sed14g0261 Sed-Chr14:2757272 3.60E-259 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0260 K02144 - csv:101217015 833.558