Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0266 | ATGAACGATCTTTTCTCCTCCGACTCGTTCCGCCGCAGCGCCGGCGAGCCGAGCCCCGACGCGCCGCCGTCAACAGCCACAAACCTCAACGGCTTCTTTGACGACGTGGAGTCCGTGAAAACGGAATTGACCGAACTGGAAGGGCTGTACCGAAAGCTACAGAAGTCCCACGAACAGAGCAAGACTCTGCATAGCTCAAAGGCGATTAAGGAAATTCGATGGAAGATGGAGTCGGAGGTGGCGGCGGCGCTGAAGAAGGCGCGGTTGATCAAGGGCCGGCTGGAGGAGCTGGACCGGGCCAATGCCGAGAACCGGGACGTGGCCGGGTGCGGGTACGGGTCCTCGACGGAGCGGTCGAGGAGCGCGGTGGTGAACGGGCTGAGGAAGAAGCTGTGTGATTGTATGGAGAGCTTTAATTTGCTCAGACAGGAGATCTCGTCGGCGTATAAGGACACCATTCAGCGCAGATATTTTACCATTACCGGAGAGAATCCTGATGAGAACACCGTTGATCTTTTGATCTCTACAGGTGAAAGTGAAACATTTCTGCAAAAAGCGATACTAAAGCAAGGAAAAGGCAGAGTTTTGGAAACAATCCAAGAGATTCAAGAAAGGCACGACGCAGTGAAGGACATGGAGAAGAATCTGAGAGAGCTGCACCAAGTGTTCATGGACATGGCCGTGCTCGTCCAAACCCAAGGCCAGCATTTGGACGACATCGAGAGCCAAGTGACTCGAGCCAACTCCGCCATCAAGCGCGGCGCCACCGAGCTACAAACTGCCCGACACTACCAGAAAAACACCCGAAAATGGATGTTCATTGGTATCGGTGCTTTTCTATTCATCCTCTTCATCATCATCCTCTCCGTCGTCCTCTCACAGAAGAAATAA | 891 | 53.54 | MNDLFSSDSFRRSAGEPSPDAPPSTATNLNGFFDDVESVKTELTELEGLYRKLQKSHEQSKTLHSSKAIKEIRWKMESEVAAALKKARLIKGRLEELDRANAENRDVAGCGYGSSTERSRSAVVNGLRKKLCDCMESFNLLRQEISSAYKDTIQRRYFTITGENPDENTVDLLISTGESETFLQKAILKQGKGRVLETIQEIQERHDAVKDMEKNLRELHQVFMDMAVLVQTQGQHLDDIESQVTRANSAIKRGATELQTARHYQKNTRKWMFIGIGAFLFILFIIILSVVLSQKK | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 2800582 | 2803731 | - | Sed0020966.1 | Sed14g0266 | 735984 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0266 | 296 | SMART | tSNARE_6 | 194 | 261 | IPR000727 | - | |
Sed14g0266 | 296 | CDD | SNARE_syntaxin1-like | 198 | 260 | - | - | |
Sed14g0266 | 296 | SMART | SynN_4 | 24 | 150 | IPR006011 | GO:0016020(InterPro) | |
Sed14g0266 | 296 | FunFam | Syntaxin 132 | 192 | 292 | - | - | |
Sed14g0266 | 296 | Coils | Coil | 199 | 219 | - | - | |
Sed14g0266 | 296 | PANTHER | SYNTAXIN | 32 | 282 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Sed14g0266 | 296 | CDD | SynN | 29 | 186 | IPR006011 | GO:0016020(InterPro) | |
Sed14g0266 | 296 | Gene3D | - | 29 | 156 | - | - | |
Sed14g0266 | 296 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 199 | 261 | IPR000727 | - | |
Sed14g0266 | 296 | Pfam | Syntaxin | 32 | 234 | IPR006011 | GO:0016020(InterPro) | |
Sed14g0266 | 296 | SUPERFAMILY | t-snare proteins | 28 | 254 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Sed14g0266 | 296 | Coils | Coil | 36 | 56 | - | - | |
Sed14g0266 | 296 | Pfam | SNARE domain | 237 | 287 | IPR000727 | - | |
Sed14g0266 | 296 | ProSitePatterns | Syntaxin / epimorphin family signature. | 205 | 244 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Sed14g0266 | 296 | Gene3D | - | 195 | 293 | - | - | |
Sed14g0266 | 296 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Sed14g0266 | 296 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 26 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2301 | Sed-Chr8:36458517 | Sed14g0266 | Sed-Chr14:2800582 | 2.10E-74 | dispersed | |
Sed12g1336 | Sed-Chr12:10205518 | Sed14g0266 | Sed-Chr14:2800582 | 9.10E-100 | dispersed | |
Sed14g0266 | Sed-Chr14:2800582 | Sed14g0695 | Sed-Chr14:6907447 | 8.80E-57 | dispersed | |
Sed14g0266 | Sed-Chr14:2800582 | Sed14g0267 | Sed-Chr14:2800909 | 3.80E-161 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0266 | K08486 | - | csv:101213443 | 425.631 |