Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0267 ATGAACGATCTTTTCTCCTCCGACTCGTTCCGCCGCAGCGCCGGCGAGCCGAGCCCCGACGCGCCGCCGTCAACAGCCACAAACCTCAACGGCTTCTTTGACGACGTGGAGTCCGTGAAAACGGAATTGACCGAACTGGAAGGGCTGTACCGAAAGCTACAGAAGTCCCACGAACAGAGCAAGACTCTGCATAGCTCAAAGGCGATTAAGGAAATTCGATGGAAGATGGAGTCGGAGGTGGCGGCGGCGCTGAAGAAGGCGCGGTTGATCAAGGGCCGGCTGGAGGAGCTGGACCGGGCCAATGCCGAGAACCGGGACGTGGCCGGGTGCGGGTACGGGTCCTCGACGGAGCGGTCGAGGAGCGCGGTGGTGAACGGGCTGAGGAAGAAGCTGTGTGATTGTATGGAGAGCTTTAATTTGCTCAGACAGGAGATCTCGTCGGCGTATAAGGACACCATTCAGCGCAGATATTTTACCATTACCGGAGAGAATCCTGATGAGAACACCGTTGATCTTTTGATCTCTACAGGTGAAAGTGAAACATTTCTGCAAAAAGCGATACTAAAGCAAGGAAAAGGCAGAGTTTTGGAAACAATCCAAGAGATTCAAGAAAGGCACGACGCAGTGAAGGACATGGAGAAGAATCTGAGAGAGCTGCACCAAGTGTTCATGGACATGGCCGTGCTCGTCCAAACCCAAGGCCAGCATTTGGACGACATCGAGAGCCAAGTGACTCGAGCCAACTCCGCCATCAAGCGCGGCGCCACCGAGCTACAAACTGCCCGACACTACCAGAAAAACACCCGAAAATGGATGTTCATTGGTATCGGTGCTTTTCTATTCATCCTCTTCATCATCATCCTCTCCGTCGTCCTCTCACAGAAGAAATAA 891 53.54 MNDLFSSDSFRRSAGEPSPDAPPSTATNLNGFFDDVESVKTELTELEGLYRKLQKSHEQSKTLHSSKAIKEIRWKMESEVAAALKKARLIKGRLEELDRANAENRDVAGCGYGSSTERSRSAVVNGLRKKLCDCMESFNLLRQEISSAYKDTIQRRYFTITGENPDENTVDLLISTGESETFLQKAILKQGKGRVLETIQEIQERHDAVKDMEKNLRELHQVFMDMAVLVQTQGQHLDDIESQVTRANSAIKRGATELQTARHYQKNTRKWMFIGIGAFLFILFIIILSVVLSQKK 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2800909 2803731 - Sed0020966.2 Sed14g0267 735985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0267 296 SMART tSNARE_6 194 261 IPR000727 -
Sed14g0267 296 CDD SNARE_syntaxin1-like 198 260 - -
Sed14g0267 296 SMART SynN_4 24 150 IPR006011 GO:0016020(InterPro)
Sed14g0267 296 FunFam Syntaxin 132 192 292 - -
Sed14g0267 296 Coils Coil 199 219 - -
Sed14g0267 296 PANTHER SYNTAXIN 32 282 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed14g0267 296 CDD SynN 29 186 IPR006011 GO:0016020(InterPro)
Sed14g0267 296 Gene3D - 29 156 - -
Sed14g0267 296 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 199 261 IPR000727 -
Sed14g0267 296 Pfam Syntaxin 32 234 IPR006011 GO:0016020(InterPro)
Sed14g0267 296 SUPERFAMILY t-snare proteins 28 254 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed14g0267 296 Coils Coil 36 56 - -
Sed14g0267 296 Pfam SNARE domain 237 287 IPR000727 -
Sed14g0267 296 ProSitePatterns Syntaxin / epimorphin family signature. 205 244 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed14g0267 296 Gene3D - 195 293 - -
Sed14g0267 296 MobiDBLite consensus disorder prediction 1 30 - -
Sed14g0267 296 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 26 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g0267 Sed-Chr14:2800909 Sed14g0695 Sed-Chr14:6907447 8.80E-57 dispersed
Sed14g0266 Sed-Chr14:2800582 Sed14g0267 Sed-Chr14:2800909 3.80E-161 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0267 K08486 - csv:101213443 425.631