Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0274 ATGCTAGCCCAGTTTGATCTTACACGCAAGGCCGAGGCTAAAATACTCAGAGGACCACATGAGGACTTAGAAATGTACTTGGAAGCAATTGATCAACTACGAAGCACAAACCGCTTCTTTACTGGGAACAAAAATTTCAAAAATAATGATTCTATTGTTACCCATACAAGCAACTTGCTTGTTAAAGCCATTTCAAAGCTGGAAGATGAGTTCAGACAGCTGTTAACAAATTACAGTAAGCCAGTGGAACCCGAGCGTCTTTTCGATTGTCTCCCCAACTCTTTGCGTCCATCATCAGCAGCTTCGCATCAAGGTGATAGCAAAAAACATTCTGACCATCACAACAAAAGCTTAGAAGCTGGGATCTTCATTCCCGTAACTCTTATTCCTCCCCGGGTTCTTCCATTGTTGCATGATTTGGCCCAACAAATGATTCTGGCCGGCCATCAGCAGCAACTGGTTAGAATATACAGGGATACTCGCTCTTCAGTTTTAGAACAGAGTCTCAGGAGATTAGGTGTTGAGAGGCTTAGCAAGGATGATGTCCAAAAAATGCAATGGGAGTCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAACTGCTGTTTGCTGGGGAAAGGAAAATCGTTGATCAAATATTTGATCATGATGGTGCAAACTCTCTCCGGGATCAATGCTTTGGAGATGTGACCACAAACAGTGTGGCAGTGCTACTAAGCTTTGGAGAGGCAATTGCCAAAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTCTAGACATGTATGAAATAATGCGAGAACTGCAATCTGAGATGGATACACTCTTTGGAAGTAAAGCATGCATTGAAATGCGAGATTCTGCATTGAGCTTAACACAGCGCCTTGCCGAGACAGCTCAAGAGACCTTCGTTGATTTTCAAGAAGCTGTAGAAAGAGATGCCACTAAAACTGCTGTTCTTGATGGGACTGTTCATCCATTGACTAGTTATGTGATAAACTATATCAAGTTTTTATTTGACTACCAGTCTACTTTGAAGCAACTATTCCAAGGCTTTGACGCTGGTGATTCAGATGCTCAGTTAGCACTGATAACTACAAGAATTACGCAGGCCCTTCAGACTAATCTTGATGGAAAATCTAAGCAATATAAGGATCCTGCATTAACTCAGTTATTTCTGATGAACAATATTCACTATATAGTGAGATCTGTCCGAAGATCGGAGGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATAGAAGGATTGTGCAGCAGCATGCAAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACTGTTCAGGCCTCAGGTGGTAGTTCGGGAGATGCTGGGAGTGGACTTTCAAAAGCTATGGTAAGAGATAGGTTTAAGACTTTTAACATCCAATTCGAAGAGCTTCATCAACGGCAATCGCAATGGACAGTTCCTGACAGTGAGTTAAGGGAGTCATTAAGGTTGGCAATTGCTGAAGTTTTGTTGCCTGCCTACCGATCCTTCATCAAGCGCTACGGGCCCATGATTGAGAGTGGGAAAAATTCTCAAAAATACATCAGATATTCACCCGAGGATCTTGAGCGTATGCTAAATGAACTTTTTGAGGGCAAGACATTCAATGAAGAAAAGCGCTAG 1686 42.29 MLAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRFFTGNKNFKNNDSIVTHTSNLLVKAISKLEDEFRQLLTNYSKPVEPERLFDCLPNSLRPSSAASHQGDSKKHSDHHNKSLEAGIFIPVTLIPPRVLPLLHDLAQQMILAGHQQQLVRIYRDTRSSVLEQSLRRLGVERLSKDDVQKMQWESLEAKIGNWIHYMRIAVKLLFAGERKIVDQIFDHDGANSLRDQCFGDVTTNSVAVLLSFGEAIAKSKRSPEKLFVLLDMYEIMRELQSEMDTLFGSKACIEMRDSALSLTQRLAETAQETFVDFQEAVERDATKTAVLDGTVHPLTSYVINYIKFLFDYQSTLKQLFQGFDAGDSDAQLALITTRITQALQTNLDGKSKQYKDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQASGGSSGDAGSGLSKAMVRDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAIAEVLLPAYRSFIKRYGPMIESGKNSQKYIRYSPEDLERMLNELFEGKTFNEEKR 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2836449 2845718 + Sed0026678.4 Sed14g0274 735992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0274 561 Pfam Exocyst complex component Exo70 N-terminal 2 76 - -
Sed14g0274 561 Pfam Exo70 exocyst complex subunit C-terminal 196 549 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed14g0274 561 SUPERFAMILY Cullin repeat-like 2 552 IPR016159 -
Sed14g0274 561 Gene3D Exocyst complex component Exo70 1 561 - -
Sed14g0274 561 PANTHER EXOCYST COMPLEX PROTEIN EXO70 16 554 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0274 K07195 - - csv:105436019 985.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g0271 Sed-Chr14:2835407 Sed14g0274 Sed-Chr14:2836449 0.00E+00 dispersed
Sed14g0272 Sed-Chr14:2835407 Sed14g0274 Sed-Chr14:2836449 0.00E+00 dispersed
Sed14g0273 Sed-Chr14:2836449 Sed14g0274 Sed-Chr14:2836449 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g903 Blo01g01242 . . . . . . . . . . Cma07g00826 Car03g01010 Car07g00813 Sed14g0274 Cpe10g00315 . Bhi03g01779 Tan03g1260 Cmetu08g1948 . Hepe04g1072 . . . . . . . . . . . Cone13ag1144 Cone19ag1123 Lsi01g01185 Csa06g02721 Chy08g00976 . . . . . . . Bma01g02005 . . Cmo03g01110 Cmo07g00855 . . . . . Cpe19g00500 . . . . . . . . . . . . . . . . . Cme08g01155
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g1977 . 10 651 EXO70 exocyst subunit family AT5G03540 75.6 1.1e-280 963.4
Sed07g2172 . 10 653 EXO70 exocyst subunit family AT5G03540 74.6 2.3e-278 955.7
Sed14g0271 . 40 675 EXO70 exocyst subunit family AT5G03540 68.7 1.6e-255 879.8
Sed14g0272 . 40 667 EXO70 exocyst subunit family AT5G03540 68.1 7.4e-253 870.9
Sed14g0274 . 1 561 EXO70 exocyst subunit family AT5G03540 68.0 3.2e-224 775.8
Sed14g0273 . 1 553 EXO70 exocyst subunit family AT5G03540 67.3 1.5e-221 766.9
Sed14g0271 . 40 675 EXO70 exocyst subunit family AT5G52340 77.5 4.1e-285 978.0
Sed14g0272 . 40 667 EXO70 exocyst subunit family AT5G52340 76.4 1.5e-279 959.5
Sed06g1977 . 12 651 EXO70 exocyst subunit family AT5G52340 72.7 1.9e-266 916.0
Sed07g2172 . 10 653 EXO70 exocyst subunit family AT5G52340 71.4 5.3e-261 897.9
Sed14g0274 . 1 561 EXO70 exocyst subunit family AT5G52340 77.4 1.3e-251 866.7
Sed14g0273 . 1 553 EXO70 exocyst subunit family AT5G52340 76.1 4.9e-246 848.2
Sed14g0271 . 184 671 EXO70 exocyst subunit family AT5G52350 61.5 9.3e-167 584.7
Sed14g0274 . 70 557 EXO70 exocyst subunit family AT5G52350 61.5 9.3e-167 584.7
Sed06g1977 . 147 651 EXO70 exocyst subunit family AT5G52350 57.9 5.3e-162 568.9
Sed14g0272 . 184 663 EXO70 exocyst subunit family AT5G52350 60.2 1.5e-161 567.4
Sed14g0273 . 70 549 EXO70 exocyst subunit family AT5G52350 60.2 1.5e-161 567.4
Sed07g2172 . 147 653 EXO70 exocyst subunit family AT5G52350 57.9 5.8e-161 565.5
Sed01g1201 . 1 627 EXO70 exocyst subunit family AT5G58430 65.5 5.0e-243 838.2
Sed01g1201 . 1 626 EXO70 exocyst subunit family AT1G07000 52.1 1.3e-171 600.9
Sed02g1010 . 63 671 EXO70 exocyst subunit family AT5G13150 50.9 1.1e-163 574.7
Sed03g0894 . 9 512 EXO70 exocyst subunit family AT5G13150 52.1 4.7e-151 532.7
Sed01g2974 . 83 661 EXO70 exocyst subunit family AT5G13990 51.9 3.8e-175 612.8
Sed03g0894 . 5 507 EXO70 exocyst subunit family AT5G13990 55.2 1.3e-164 577.8
Sed06g0018 . 9 610 EXO70 exocyst subunit family AT1G72470 63.6 2.5e-210 729.6
Sed06g2306 . 10 611 EXO70 exocyst subunit family AT1G72470 59.9 1.5e-194 677.2
Sed06g0018 . 9 608 EXO70 exocyst subunit family AT1G54090 60.5 2.9e-203 706.1
Sed06g2306 . 3 609 EXO70 exocyst subunit family AT1G54090 58.7 1.0e-195 681.0
Sed06g0018 . 1 609 EXO70 exocyst subunit family AT3G14090 62.3 1.1e-213 740.7
Sed06g2306 . 10 610 EXO70 exocyst subunit family AT3G14090 60.6 1.7e-203 706.8
Sed08g2438 . 21 660 EXO70 exocyst subunit family AT5G50380 62.9 1.4e-227 786.9
Sed01g1563 . 17 654 EXO70 exocyst subunit family AT5G50380 61.8 5.3e-222 768.5
Sed08g0032 . 14 650 EXO70 exocyst subunit family AT5G50380 60.6 3.0e-217 752.7
Sed12g2505 . 10 634 EXO70 exocyst subunit family AT5G50380 58.6 1.8e-209 726.9
Sed01g1298 . 1 671 EXO70 exocyst subunit family AT4G31540 73.4 2.2e-292 1002.3
Sed03g1531 . 13 679 EXO70 exocyst subunit family AT4G31540 72.6 3.5e-290 995.0
Sed07g2435 . 45 589 EXO70 exocyst subunit family AT2G39380 50.1 1.3e-142 504.6
Sed02g0708 . 34 628 EXO70 exocyst subunit family AT3G09520 54.5 1.1e-173 607.8
Sed04g1299 . 35 635 EXO70 exocyst subunit family AT3G09520 53.3 2.5e-170 596.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 2