Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0279 ATGCGCGGCGGCTACCGAGTTCCGAACCGGCCGGAGCCACCGCCGCAGTCCCAAACTGCGCAGATCCTGCCGCCGCTCAAGCGGCAGCTCGCTTTCTACTCCACCAAGCCGCCGTTCCTCCCTCCCGGCGACTATTACCACTTTGCCGGCGGTTCTTCCAATGCTCTCCATCCACAACCTGATTCTCTTGTTGTTAAGCCTCTTAAACCAAGCCAGAAGAGTGTCATGTATAACAATGTGGTTGAATCTAATGACTGCAGTCATGATCAGGGATCTTCAAAAGATGCTCTAAGTTTTGTACAGACACCTGTATCTACAAAAGGAGGAAGGGTGTGTAATAAGTCAAAGGCTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACAAGCACATATTCTCCTCTCACTCTGGCTGCAAACTGTCGATATGACAATTCTCTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGAACGTGCAGAAGAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGCCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAGTGCTCAAATTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGAAGATTAGATGAAAAGATAAGAGTATTGCAGGAAAGATTAAGGAATCTTAGTGAAGACGAAAATATCCAAAAATGGCTCTTTGTGACCGAAGAAGACATTAAAAGTTTGCCTTGCTTTGAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATCTTCCACAAAGAAGATATAGAATAGTTCTTAGGAGCACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCATCCTTCACACTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATTATTCGGGAGAGTAGTAGAAACGATTTTGAGTCTCAAGTTCAACTTTCCCAGTACAGCAGCAGTTGTGGTGTGAATGGATCAAATGAGTTTCCGGGTGGAATGATGAAGATTATGCCTTCAGATGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGACCAATCAGATATGGTTTCTCATGACTTTGTAATGTCTGATTATAATGCCCAAAGGCCAAGACCAGCAAGCCCACATTCAGAGACCGGCGAGGCGCCATCTGCTGATGTTAACTTAAAATAA 1416 42.8 MRGGYRVPNRPEPPPQSQTAQILPPLKRQLAFYSTKPPFLPPGDYYHFAGGSSNALHPQPDSLVVKPLKPSQKSVMYNNVVESNDCSHDQGSSKDALSFVQTPVSTKGGRVCNKSKASRKTTSGPQTPISDTSTYSPLTLAANCRYDNSLGLLTKKFINLIKQARDGILDLNKAAETLNVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFSAQIPGNVDSDTSMLQVDVENLSFEERRLDEKIRVLQERLRNLSEDENIQKWLFVTEEDIKSLPCFENETLIAIKAPHGTTLEVPDPDEAVDLPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSILHTSSSGSNEHLATEAIIRESSRNDFESQVQLSQYSSSCGVNGSNEFPGGMMKIMPSDVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVSHDFVMSDYNAQRPRPASPHSETGEAPSADVNLK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2893542 2904110 + Sed0010210.1 Sed14g0279 735997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0279 471 Gene3D - 140 213 IPR036388 -
Sed14g0279 471 SMART E2F_TDP_2 145 210 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed14g0279 471 Coils Coil 230 257 - -
Sed14g0279 471 Pfam E2F transcription factor CC-MB domain 226 326 IPR032198 GO:0046983(InterPro)
Sed14g0279 471 SUPERFAMILY E2F-DP heterodimerization region 224 327 IPR037241 -
Sed14g0279 471 MobiDBLite consensus disorder prediction 105 131 - -
Sed14g0279 471 MobiDBLite consensus disorder prediction 446 471 - -
Sed14g0279 471 FunFam E2F transcription factor 1 139 212 - -
Sed14g0279 471 Pfam E2F/DP family winged-helix DNA-binding domain 147 210 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed14g0279 471 PANTHER TRANSCRIPTION FACTOR E2F 66 425 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Sed14g0279 471 CDD E2F_DD 226 327 IPR032198 GO:0046983(InterPro)
Sed14g0279 471 MobiDBLite consensus disorder prediction 1 20 - -
Sed14g0279 471 SUPERFAMILY Winged helix DNA-binding domain 145 208 IPR036390 -
Sed14g0279 471 Gene3D - 217 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1691 Sed-Chr3:10982597 Sed14g0279 Sed-Chr14:2893542 1.20E-54 dispersed
Sed08g2542 Sed-Chr8:38087592 Sed14g0279 Sed-Chr14:2893542 2.30E-09 dispersed
Sed08g2543 Sed-Chr8:38087592 Sed14g0279 Sed-Chr14:2893542 2.20E-09 dispersed
Sed14g0279 Sed-Chr14:2893542 Sed14g0281 Sed-Chr14:2893542 5.50E-271 dispersed
Sed14g0279 Sed-Chr14:2893542 Sed14g0280 Sed-Chr14:2893542 5.50E-271 tandem
Sed01g3208 Sed-Chr1:58598748 Sed14g0279 Sed-Chr14:2893542 2.50E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40536 PF16421 E2F_CC-MB 5.40E-33 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0279 K06620 - csv:101212480 706.057