Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0279 ATGCGCGGCGGCTACCGAGTTCCGAACCGGCCGGAGCCACCGCCGCAGTCCCAAACTGCGCAGATCCTGCCGCCGCTCAAGCGGCAGCTCGCTTTCTACTCCACCAAGCCGCCGTTCCTCCCTCCCGGCGACTATTACCACTTTGCCGGCGGTTCTTCCAATGCTCTCCATCCACAACCTGATTCTCTTGTTGTTAAGCCTCTTAAACCAAGCCAGAAGAGTGTCATGTATAACAATGTGGTTGAATCTAATGACTGCAGTCATGATCAGGGATCTTCAAAAGATGCTCTAAGTTTTGTACAGACACCTGTATCTACAAAAGGAGGAAGGGTGTGTAATAAGTCAAAGGCTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACAAGCACATATTCTCCTCTCACTCTGGCTGCAAACTGTCGATATGACAATTCTCTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGAACGTGCAGAAGAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGCCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAGTGCTCAAATTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGAAGATTAGATGAAAAGATAAGAGTATTGCAGGAAAGATTAAGGAATCTTAGTGAAGACGAAAATATCCAAAAATGGCTCTTTGTGACCGAAGAAGACATTAAAAGTTTGCCTTGCTTTGAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATCTTCCACAAAGAAGATATAGAATAGTTCTTAGGAGCACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCATCCTTCACACTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATTATTCGGGAGAGTAGTAGAAACGATTTTGAGTCTCAAGTTCAACTTTCCCAGTACAGCAGCAGTTGTGGTGTGAATGGATCAAATGAGTTTCCGGGTGGAATGATGAAGATTATGCCTTCAGATGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGACCAATCAGATATGGTTTCTCATGACTTTGTAATGTCTGATTATAATGCCCAAAGGCCAAGACCAGCAAGCCCACATTCAGAGACCGGCGAGGCGCCATCTGCTGATGTTAACTTAAAATAA 1416 42.8 MRGGYRVPNRPEPPPQSQTAQILPPLKRQLAFYSTKPPFLPPGDYYHFAGGSSNALHPQPDSLVVKPLKPSQKSVMYNNVVESNDCSHDQGSSKDALSFVQTPVSTKGGRVCNKSKASRKTTSGPQTPISDTSTYSPLTLAANCRYDNSLGLLTKKFINLIKQARDGILDLNKAAETLNVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFSAQIPGNVDSDTSMLQVDVENLSFEERRLDEKIRVLQERLRNLSEDENIQKWLFVTEEDIKSLPCFENETLIAIKAPHGTTLEVPDPDEAVDLPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSILHTSSSGSNEHLATEAIIRESSRNDFESQVQLSQYSSSCGVNGSNEFPGGMMKIMPSDVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVSHDFVMSDYNAQRPRPASPHSETGEAPSADVNLK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2893542 2904110 + Sed0010210.1 Sed14g0279 735997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0279 471 Gene3D - 140 213 IPR036388 -
Sed14g0279 471 SMART E2F_TDP_2 145 210 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed14g0279 471 Coils Coil 230 257 - -
Sed14g0279 471 Pfam E2F transcription factor CC-MB domain 226 326 IPR032198 GO:0046983(InterPro)
Sed14g0279 471 SUPERFAMILY E2F-DP heterodimerization region 224 327 IPR037241 -
Sed14g0279 471 MobiDBLite consensus disorder prediction 105 131 - -
Sed14g0279 471 MobiDBLite consensus disorder prediction 446 471 - -
Sed14g0279 471 FunFam E2F transcription factor 1 139 212 - -
Sed14g0279 471 Pfam E2F/DP family winged-helix DNA-binding domain 147 210 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed14g0279 471 PANTHER TRANSCRIPTION FACTOR E2F 66 425 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Sed14g0279 471 CDD E2F_DD 226 327 IPR032198 GO:0046983(InterPro)
Sed14g0279 471 MobiDBLite consensus disorder prediction 1 20 - -
Sed14g0279 471 SUPERFAMILY Winged helix DNA-binding domain 145 208 IPR036390 -
Sed14g0279 471 Gene3D - 217 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0279 K06620 - - csv:101212480 706.057
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1691 Sed-Chr3:10982597 Sed14g0279 Sed-Chr14:2893542 1.20E-54 dispersed
Sed08g2542 Sed-Chr8:38087592 Sed14g0279 Sed-Chr14:2893542 2.30E-09 dispersed
Sed08g2543 Sed-Chr8:38087592 Sed14g0279 Sed-Chr14:2893542 2.20E-09 dispersed
Sed14g0279 Sed-Chr14:2893542 Sed14g0281 Sed-Chr14:2893542 5.50E-271 dispersed
Sed14g0279 Sed-Chr14:2893542 Sed14g0280 Sed-Chr14:2893542 5.50E-271 tandem
Sed01g3208 Sed-Chr1:58598748 Sed14g0279 Sed-Chr14:2893542 2.50E-127 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40536 PF16421 E2F_CC-MB 5.40E-33 No_clan Sed TF