Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0315 ATGGCGGAAGAACACAGATGCCAAGCACCGGAAGGTCACCGTCTCTGCGCCAATAACTGCGGCTTCTTCGGCAGCCCAGCCACCATGGATCTCTGCTCCAAATGTTACAGAGACATTCGCCTCAAGGAACAAGAACAAGCCTCCACCAAATCCACCATTGAAGCCGCTCTCTCAGCTTCCTCTTCTTCCCCTTCCTCTTCTTCCCCCATCGATCCTCCTCCTCCTGTTTCCCCTGTCGTAATCTTGTCCTCGCCGCCGTCGCCGGACTCAGATCTGACCAACCCGCCTCCGCTTGCAGCGGCGAACCCGAACCCGAACCCGATTCCGAACCCGAACCGGTGTTCTTCCTGCCGCAAGAAGGTTGGTCTGACCGGGTTCCGATGCAGATGCGGAACCACGTTCTGTGGAGCTCATAGGTATCCGGAGAAACACGGCTGCACCTTCGATTTCAAGTCGATCGGAAGAGATGAGATCGCTCGAGCGAATCCGGTCGTGAAAGCCGATAAACTGGAGAGGATTTGA 522 56.32 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDIRLKEQEQASTKSTIEAALSASSSSPSSSSPIDPPPPVSPVVILSSPPSPDSDLTNPPPLAAANPNPNPIPNPNRCSSCRKKVGLTGFRCRCGTTFCGAHRYPEKHGCTFDFKSIGRDEIARANPVVKADKLERI 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3264076 3266275 - Sed0004982.3 Sed14g0315 736033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0315 173 SMART AN1_Zf_4 114 151 IPR000058 GO:0008270(InterPro)
Sed14g0315 173 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Sed14g0315 173 SUPERFAMILY AN1-like Zinc finger 103 168 IPR035896 -
Sed14g0315 173 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Sed14g0315 173 MobiDBLite consensus disorder prediction 46 111 - -
Sed14g0315 173 Pfam AN1-like Zinc finger 114 150 IPR000058 GO:0008270(InterPro)
Sed14g0315 173 ProSiteProfiles Zinc finger AN1-type profile. 108 154 IPR000058 GO:0008270(InterPro)
Sed14g0315 173 MobiDBLite consensus disorder prediction 48 66 - -
Sed14g0315 173 MobiDBLite consensus disorder prediction 89 110 - -
Sed14g0315 173 MobiDBLite consensus disorder prediction 67 82 - -
Sed14g0315 173 FunFam Zinc finger AN1-type containing 6 90 169 - -
Sed14g0315 173 PANTHER AN1-TYPE ZINC FINGER PROTEIN 11 173 IPR050652 -
Sed14g0315 173 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Sed14g0315 173 Gene3D - 1 70 - -
Sed14g0315 173 Gene3D - 88 169 IPR035896 -
Sed14g0315 173 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g0313 Sed-Chr14:3264076 Sed14g0315 Sed-Chr14:3264076 2.50E-80 dispersed
Sed14g0314 Sed-Chr14:3264076 Sed14g0315 Sed-Chr14:3264076 2.50E-80 tandem
Sed14g0315 Sed-Chr14:3264076 Sed14g0316 Sed-Chr14:3264076 2.50E-80 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0315 - - - 0.0