Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0325 ATGGGATCTGGTACTTGCGAAATTGTTGAAGCAAGGGAAGAAATCAAACCTGTTCAAAGTAAGATAGTATCTCGTCATTCAGATTTTGTATCAGACAAAGATCGTAAACTTTCTGCATTGAAACATGGATTCAAGGGATCTCTAAATGATGATATCAATCTGCTTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCACAAGTAGAGGTAAATGCACTGAGAAAAAGTACACTTAAGAAGCCAATAACTGTAGGCATACCTCGCTCACCAGGTATCGGTACTTCTGAATCCGGTACTCTAAAGCAAGCACTCAGGGAACTTTGCCTTTCAAAGGCATCCGAAATGGCTGCTATCAAAAGATCATCAAAATCGGCTAGCTCTTCAAGACTCTCGGAAGCTGGGCGGATCAAGACGTTGTACAATTCAGTTATGGTTGAAGCCACTGAGTCAGGCTCTTCCTCAGATAATGGTAAGGGAGGGCGCGTGGTTGAAATATCTCTGGTTCCTGAGGAAAAAACATTGAAATTTGAAAAGAGACTTGAGCACAACCAGGTATCTGCTATTAAATCACCCGCTGAAACTGCTCGTTCTTCTCCTCAATTACCAACTGCAACAATGCAAAATTCTGTTGAGGTTGTTATTGTTGAAACAACCGCCAATACCACTTTGGCGAGGAAAGTTGGGTCTCAAACATTGAAGGCAGAGTTGGAGAAGGAAGAGGAGTCCATTACGCCGCCATCTATATCTTCATGCACTATTGGCAAGGTTTTAGAGAAGGAGAAGAAAACTCTGGCCTCGAGCAGGGTAGCAAATAAAGTATCATCATCCAAGGCAGTTAGGAAAGGTAGGTTGCAAACTGCATCTTCATCTAAGTTGGGTAGTGGCAATAAGGTAAGTAAGTTAACTAGAAGTAACTCCCGTTCCGTCAAACCAGTTAGTAGGAACAAAGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGCAGTTCAAGCACATACAATGCAGTCAATAGTGATATGGATCCTAGTAAAAAGAAATTGATATGCGAGAGGTGCCACTGTGCATTGAATAGTGAAGCGAAAGACTCAAAGAAGGGATCTGCATCTCAGTTCAGTGGTCTTGGTACCGATGTAAACATGGCTAGTGCAAAATCTGGTGTTAACAAATCAGGCATCAACGCGGAAGGCAAGGCTTCTGATGCTAGAGTAAAAAAAAATACAAGGGTACGCGATAAGGGTGAATTTTCTCAAAGCTCAAAAAGTAGTCAAGGTGAGTACAGTAGCAGTACGACGAGTATTATAAGTGATGACAGCAATGGGCATGGATCCAGTAATGGTAACAGACCTCATATGTCAAAAGATGTTAGGTGGGAAGCCATACGCCATGCGCAATTGCAGCATGGGGTCCTCAGCTTAAGGCATTTCAATCTTTTAAAGAAGCTTGGTTGTGGGGATATCGGAACCGTGTATCTCGCTGAGCTAACTGGCACTAATTGCTTATTTGCCATTAAGGTCATGGACAATGAGTTTTTAGCAAGACGGAAGAAAATGCCTAGAGCACAAACTGAGAGAGAAATATTGAGAATGCTAGATCATCCATTTCTCCCTACACTGTATGTTCAGTTCACTTCAGATAACCTATCATGTCTTGTCATGGAGTATTGTCCTGGGGGCGATCTTCATGTTCTACGGCAGAAACAGCTATGCAGAGTTTTTCCTGAACCTGCAGCAAGATTTTATGTTGCTGAGGTTCTCCTTGCTCTGGAGTACTTGCACATGCTTGGAGTTATTTATAGAGATTTAAAACCTGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACTGACTTCGACCTGTCGCTTAGGTGCACGGTCAGTCCAACACTCCTGAAGTCATCATCCTTCAATGCAGACTTGCCCAAAACATCAGGTCCATGTACAGATTCTAGTTGTGCTGAGCCGTTTTGCATTGAGCCATCATGTCAAGTCCCATGCTTCAGCCCAAGGTTTCTACCAGCTGCTTCCAAAACCAGAAAGTCAAAACCTGACCTCACAACACAGTTCAGGTCGTTGCCCCAGCTCATTGCCGAACCCACTGACGCACGATCCAACTCCTTCGTGGGGACTCATGAATATTTGGCTCCCGAGATCATTAAAGGCGAAGGCCATGGAGCCGCAGTTGATTGGTGGACGTTTGGTGTTTTTCTCTATGAGCTTCTGTATGGTAAAACCCCTTTCAAGGGTTCCAATAATGACGAAACATTGGCCAATGTAGTATTGCAGGGCCTCAGTTTTCCAGACAGCCCAATCGTTAGTTTCCAAGCAAGAGATCTAATCAGAGGGTTGTTAGTAAAAGAACCCGAAAACCGATTCGGGACAGAGAAAGGGGCTGCGGAAATCAAACAGCACCCATTCTTCGAGGGGCTAAACTGGGCATTGATCCGATGTGCGATTCCTCCCGAAGTTCCCGACTTATGCGATATGGACATTCCAAGCATGATTTCGCAACAAAACAAGTTCAGGTACTTGGAAAGCAAGTCCACGGGAGAGCACTTGGAGTTCGAATTGTTTTAG 2607 43.61 MGSGTCEIVEAREEIKPVQSKIVSRHSDFVSDKDRKLSALKHGFKGSLNDDINLLFESISIKNASKSLGHSQVEVNALRKSTLKKPITVGIPRSPGIGTSESGTLKQALRELCLSKASEMAAIKRSSKSASSSRLSEAGRIKTLYNSVMVEATESGSSSDNGKGGRVVEISLVPEEKTLKFEKRLEHNQVSAIKSPAETARSSPQLPTATMQNSVEVVIVETTANTTLARKVGSQTLKAELEKEEESITPPSISSCTIGKVLEKEKKTLASSRVANKVSSSKAVRKGRLQTASSSKLGSGNKVSKLTRSNSRSVKPVSRNKGLAKKKVKQDLSSPTCSSSTYNAVNSDMDPSKKKLICERCHCALNSEAKDSKKGSASQFSGLGTDVNMASAKSGVNKSGINAEGKASDARVKKNTRVRDKGEFSQSSKSSQGEYSSSTTSIISDDSNGHGSSNGNRPHMSKDVRWEAIRHAQLQHGVLSLRHFNLLKKLGCGDIGTVYLAELTGTNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLCRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVSPTLLKSSSFNADLPKTSGPCTDSSCAEPFCIEPSCQVPCFSPRFLPAASKTRKSKPDLTTQFRSLPQLIAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGKTPFKGSNNDETLANVVLQGLSFPDSPIVSFQARDLIRGLLVKEPENRFGTEKGAAEIKQHPFFEGLNWALIRCAIPPEVPDLCDMDIPSMISQQNKFRYLESKSTGEHLEFELF 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3333838 3339017 + Sed0001360.1 Sed14g0325 736043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0325 868 CDD STKc_phototropin_like 482 838 - -
Sed14g0325 868 Pfam Protein kinase domain 485 636 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0325 868 Pfam Protein kinase domain 714 817 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0325 868 MobiDBLite consensus disorder prediction 271 349 - -
Sed14g0325 868 SMART serkin_6 484 817 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0325 868 ProSiteProfiles Protein kinase domain profile. 484 817 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0325 868 MobiDBLite consensus disorder prediction 272 317 - -
Sed14g0325 868 FunFam serine/threonine-protein kinase D6PK-like 712 835 - -
Sed14g0325 868 Gene3D Transferase(Phosphotransferase) domain 1 564 633 - -
Sed14g0325 868 FunFam Serine/threonine-protein kinase D6PK-like 482 567 - -
Sed14g0325 868 Gene3D Transferase(Phosphotransferase) domain 1 710 835 - -
Sed14g0325 868 MobiDBLite consensus disorder prediction 407 424 - -
Sed14g0325 868 MobiDBLite consensus disorder prediction 331 348 - -
Sed14g0325 868 MobiDBLite consensus disorder prediction 396 460 - -
Sed14g0325 868 Gene3D Phosphorylase Kinase; domain 1 482 563 - -
Sed14g0325 868 MobiDBLite consensus disorder prediction 425 459 - -
Sed14g0325 868 SUPERFAMILY Protein kinase-like (PK-like) 459 835 IPR011009 -
Sed14g0325 868 PANTHER FLIPPASE KINASE 1-RELATED 311 842 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed14g0325 868 FunFam serine/threonine-protein kinase D6PK-like 568 635 - -
Sed14g0325 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3169 Sed-Chr1:56994948 Sed14g0325 Sed-Chr14:3333838 1.50E-191 dispersed
Sed10g1115 Sed-Chr10:12766537 Sed14g0325 Sed-Chr14:3333838 0.00E+00 dispersed
Sed14g0325 Sed-Chr14:3333838 Sed14g1270 Sed-Chr14:21747693 2.80E-151 dispersed
Sed01g3168 Sed-Chr1:56994948 Sed14g0325 Sed-Chr14:3333838 5.10E-198 wgd
Sed10g1114 Sed-Chr10:12766537 Sed14g0325 Sed-Chr14:3333838 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80138 PF00069 Pkinase 5.50E-36 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0325 - - - 0.0