Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0355 ATGGAGGCTCTGTTTCTCAACGCACCCACATCGCACTCACTTGCTCGGCGATGTCTCATTTCACCCCAACAACCCTATTTCTCCACCAACAATCGAAGCAGCATCGGAGTTACCAGGCCGCCGCCGCCGTTCATACAAGCGGCGGTTTCGAAACAGGCGGTGGAGATCTCTAACAATTCGGCGTTGGATTCTTCGATTGCGACTCTCGGAGACGCATTGGCGGCGCCCCCTTCGCCTCCTCGCAAAAGGGTCGCCGCCGATTCGCTGCAGTTCCCGCCGGGCTATCTCGGCGCGGTTCCGGACCGTTCGGATGATGGCGGTGTCGATGGGCTCGACGCTATGGAGTATTTGACTAGGATTTTGGGTTCGAAGGTTTATGATGTTGCTATTGAATCCCCCTTGCAGCTTGCGCCTAAGTTGTCTGAGCGTTTGGGGGTTAATATCTGGCTCAAGAGGGAGGATTTGCAGCCTGTATTCTCATTCAAGCTCCGAGGAGCTTATAATATGATGGCCAAACTTCCAAGAGAACAGTTGGAAAAAGGAGTTATATGCTCCTCAGCTGGAAATCATGCTCAAGGAGTTGCATTAGCGGCTAAGCGATTAAAATGTGATGCTGTGATTGCGATGCCCGTTACTACTCCTGAAATTAAGTGGCAATCAGTTCAAAAATTGGGTGCAACTGTTGTTCTTGTTGGAGATTCGTACGATGAGGCACAAGCATATGCTAAAAAGCGGAGCAAAGAGGAAGGCCGAGCATTCATACCCCCGTTCGATCACCCTGATGTTATAGCCGGGCAGGGTACGGTTGGGATGGAAATTGTGCGTCAAATAAAGGGCCCATTACATGCAATTTTTGTGCCAGTTGGGGGTGGTGGTCTAATAGCTGGGATTGCTGCTTATGTCAAGAGGGTTTCTCCTGAGGTAAAAATTATTGGGGTGGAGCCATCTGATGCAAATGCTATGGCATTATCATTATGTCATGGCGAAAGAATAGTATTGGACAAGGCAGGAGTTTTTGCAGATGGTGTAGCAGTTAAAGAAGTTGGCGAAGAAACATTTCGCCTTTGCAAAGATCTCATGGACGGTGTAGTTCTTGTTAGTCGTGATTCTATATGTGCCTCAATAAAGGATATGTTTGAAGAGAAGAGGAGCATCTTGGAACCTGCAGGTGCTCTTTCTCTTGCTGGAGCTGAGGCATACTGCAAGTATTATGGCTTGAAGGGAGAAAATGTTGTGGTAATAACCAGCGGTGCAAATATGAACTTTGACAAACTGAGAATAGTTACTGAGCTTGCCAATGTTGGGCGTGAACGAGAGGCTGTGCTCGCAACTATAGTGCCAGAGACACCCGGAAGCTTTAAAAAATTTTGTGAACTGGTTGGGCCTATGAACATTACAGAATTCAAGTATAGATATAACTGCGAAAAACAGGCAGTTGTTCTTTATAATGTTGGTATGCATATGCCTTCAGAACTTGAAGAAATGAAGAATCGGCTGATATCTTCTCAGCTTGAAACTTATAATCTCACAAATAATGATCTTGTAAAGGATCACTTGCGTTACTTGATGGGAGGCAAATCAAATGTCGAAAACGAGGTTCTTTGTCGTTTTATTTTCCCAGAAAGGCCGGGTGCTCTAGAGAAATTCTTAGATGCTTTCAGTCCTCGTTGGAACATTAGTTTGTTTCACTATCGTGGACAGGGTGAAACTGGTGCAAACATATTAGTTGGATTTCAGATCCATAAATCAGATATGCCCGAATTCCACGAGCGTGCTAGGAGGCTTGGGTACGAGTATGTCGTGGTAACTGATGATGGTGTCTTTCAGCTTCTAATGCACACGTAG 1845 46.18 MEALFLNAPTSHSLARRCLISPQQPYFSTNNRSSIGVTRPPPPFIQAAVSKQAVEISNNSALDSSIATLGDALAAPPSPPRKRVAADSLQFPPGYLGAVPDRSDDGGVDGLDAMEYLTRILGSKVYDVAIESPLQLAPKLSERLGVNIWLKREDLQPVFSFKLRGAYNMMAKLPREQLEKGVICSSAGNHAQGVALAAKRLKCDAVIAMPVTTPEIKWQSVQKLGATVVLVGDSYDEAQAYAKKRSKEEGRAFIPPFDHPDVIAGQGTVGMEIVRQIKGPLHAIFVPVGGGGLIAGIAAYVKRVSPEVKIIGVEPSDANAMALSLCHGERIVLDKAGVFADGVAVKEVGEETFRLCKDLMDGVVLVSRDSICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGENVVVITSGANMNFDKLRIVTELANVGREREAVLATIVPETPGSFKKFCELVGPMNITEFKYRYNCEKQAVVLYNVGMHMPSELEEMKNRLISSQLETYNLTNNDLVKDHLRYLMGGKSNVENEVLCRFIFPERPGALEKFLDAFSPRWNISLFHYRGQGETGANILVGFQIHKSDMPEFHERARRLGYEYVVVTDDGVFQLLMHT 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3636574 3644618 - Sed0001057.1 Sed14g0355 736073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0355 614 CDD ACT_ThrD-I_1 439 522 - -
Sed14g0355 614 FunFam L-threonine dehydratase 227 411 - -
Sed14g0355 614 CDD Thr-dehyd 117 421 - -
Sed14g0355 614 Gene3D Biosynthetic Threonine Deaminase; Domain 3 439 613 IPR038110 -
Sed14g0355 614 Pfam C-terminal regulatory domain of Threonine dehydratase 430 519 IPR001721 -
Sed14g0355 614 Pfam C-terminal regulatory domain of Threonine dehydratase 524 610 IPR001721 -
Sed14g0355 614 FunFam Threonine dehydratase 439 613 - -
Sed14g0355 614 Gene3D - 165 256 IPR036052 -
Sed14g0355 614 CDD ACT_ThrD-I_2 532 612 - -
Sed14g0355 614 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 153 166 IPR000634 GO:0006520(InterPro)|GO:0030170(InterPro)
Sed14g0355 614 Pfam Pyridoxal-phosphate dependent enzyme 131 417 IPR001926 -
Sed14g0355 614 NCBIfam threonine ammonia-lyase, biosynthetic 115 611 IPR005787 GO:0004794(InterPro)|GO:0009097(InterPro)
Sed14g0355 614 ProSiteProfiles ACT-like domain profile. 440 511 IPR001721 -
Sed14g0355 614 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 113 467 IPR036052 -
Sed14g0355 614 SUPERFAMILY ACT-like 520 612 IPR045865 -
Sed14g0355 614 ProSiteProfiles ACT-like domain profile. 533 604 IPR001721 -
Sed14g0355 614 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 119 603 IPR050147 GO:0003941(PANTHER)|GO:0004794(PANTHER)|GO:0006565(PANTHER)|GO:0006567(PANTHER)|GO:0009097(PANTHER)
Sed14g0355 614 Gene3D - 133 411 IPR036052 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1087 Sed-Chr10:11315944 Sed14g0355 Sed-Chr14:3636574 4.40E-305 dispersed
Sed14g0355 Sed-Chr14:3636574 Sed14g0357 Sed-Chr14:3667015 1.20E-188 dispersed
Sed14g0355 Sed-Chr14:3636574 Sed14g0356 Sed-Chr14:3661673 2.50E-74 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0355 K01754 - csv:101205909 1024.62