Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0361 ATGACGACCATGCTATCATTAACATCGCGAGGGGTGTGGGCGTTTGTGTTGGTGGTGTTGTTGGTTATAGTTGCGCGAGCAAACGCAACAACTAGCTCATATGGCAAGAAACCCAGGCAACGGTTTAAGCCTGGCCCTTGGAAGAAGGCTCACGCTACCTTTTATGAAGGCGGGTCTGGCTCGTTTGGTGGTGCATGCGGGTACACCGATGTGGAAAAGGAAGGGTACGGGATGCAAACCGCAGCGCTAAGCGATGCGCTGTTCAAAGACGGGCAGGGCTGCGGCGCTTGCTTTGAAATAAAATGCGACGAGGGTACCGAGTTGTGCAAGCCCGGGCAGCCTTCTCTGAAAGTAACGGGAACCAACCACTGCCCGCCCGACAGCACGGGCGGATGGTGCAATCCGCCCAAAGAGCATTTCGACATAGCCAAGCCTGTTTTCGCCAACCTTGCTGAGTACAAGGCTGGCGCTATTCCTGTCACTTACCGCAGGATACCATGTGAGAGGGAAGGAGGAATGCGATTCACGATAACAGGAAATCCACACTACAGCGAAGTGTTAGTGTCGAACGTGGGAGGAGCGGGAGACTTGACCAGCGTCGAAGTGAGGGGGGACGCCAAGCTCAAATGGACCACCTTGACTCGCAAGTGGGGTCAGAAATGGACCACCGACGCCATGTTGGCCGGCGAGTCGCTTACGTTCAAGATTCGAACCAGCGATGGAAGAAGCACCATATCGCGGAACATTGCTCCAACCAATTGGCAGTTTGGGGTTTACTCTGTCAATTTCGAGATAAAAAACAACTGTCCGTTTCCAATCTGGCCGGGAGCCTTGACCGGCGCCGGCACCCAGCTGTCAACCACCGGCTTCAAATTACTCCCCGGAACAACGGCGGCGGTCGCCACATCGCCGCCGTGGTCCGGCCGGTTTTGGGCCCGAACACTCTGCTCCACGGATTCAACCGGAAAATTTTCTTGCGGAACCGCCGACTGCGGCGGCGGCCAAGTCACGTGCAACGGCGGCGGCGCAATCCCGCCGGCGAGCCTGGTGGAATTCACGATCGCACCAAACGGCGGCCAAGATTTCTATGACGTCAGCCTCGTGGACGGCTTTAACTTGCCCGTTTCCGTGACGCCGTTAGGCGGATCGGGTGGGTGCAAGTCGGTAATTTGCGCGGGAAACGTTAACGCCCTGTGTCCGCCGGAGTTGGCCGTTACCGGGCAAAATGGCGCGGTGATTGGTTGTAAAAGTGCTTGTTTGGCTTTTAATCGGCCGGAATTTTGCTGCTACGGCGACCACAATCGGCCGGAAACTTGCCCGCCGACGAATTATTCTATGATATTTAAGAATCAATGTCCTCAAGCCTATAGTTATGCTTATGATGATAAGACTAGTACTTTTACATGTAATGGTGGACCAAATTATGTTATTACATTTTGTCCTTAA 1446 54.43 MTTMLSLTSRGVWAFVLVVLLVIVARANATTSSYGKKPRQRFKPGPWKKAHATFYEGGSGSFGGACGYTDVEKEGYGMQTAALSDALFKDGQGCGACFEIKCDEGTELCKPGQPSLKVTGTNHCPPDSTGGWCNPPKEHFDIAKPVFANLAEYKAGAIPVTYRRIPCEREGGMRFTITGNPHYSEVLVSNVGGAGDLTSVEVRGDAKLKWTTLTRKWGQKWTTDAMLAGESLTFKIRTSDGRSTISRNIAPTNWQFGVYSVNFEIKNNCPFPIWPGALTGAGTQLSTTGFKLLPGTTAAVATSPPWSGRFWARTLCSTDSTGKFSCGTADCGGGQVTCNGGGAIPPASLVEFTIAPNGGQDFYDVSLVDGFNLPVSVTPLGGSGGCKSVICAGNVNALCPPELAVTGQNGAVIGCKSACLAFNRPEFCCYGDHNRPETCPPTNYSMIFKNQCPQAYSYAYDDKTSTFTCNGGPNYVITFCP 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3752296 3759167 - Sed0005034.1 Sed14g0361 736079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0361 481 SUPERFAMILY Osmotin, thaumatin-like protein 262 481 IPR037176 -
Sed14g0361 481 SUPERFAMILY Barwin-like endoglucanases 46 190 IPR036908 -
Sed14g0361 481 SMART tha2 263 481 IPR001938 -
Sed14g0361 481 Gene3D - 32 168 IPR036908 -
Sed14g0361 481 Pfam Thaumatin family 267 481 IPR001938 -
Sed14g0361 481 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576(InterPro)
Sed14g0361 481 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576(InterPro)
Sed14g0361 481 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576(InterPro)
Sed14g0361 481 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576(InterPro)
Sed14g0361 481 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576(InterPro)
Sed14g0361 481 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 172 IPR007112 -
Sed14g0361 481 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 257 IPR007117 -
Sed14g0361 481 SUPERFAMILY PHL pollen allergen 169 258 IPR036749 -
Sed14g0361 481 Gene3D - 172 263 IPR036749 -
Sed14g0361 481 PANTHER EXPANSIN-A15 17 257 IPR002963 GO:0009664(InterPro)
Sed14g0361 481 ProSitePatterns Thaumatin family signature. 322 338 IPR017949 -
Sed14g0361 481 PRINTS Expansin signature 116 126 IPR002963 GO:0009664(InterPro)
Sed14g0361 481 PRINTS Expansin signature 147 160 IPR002963 GO:0009664(InterPro)
Sed14g0361 481 PRINTS Expansin signature 183 204 IPR002963 GO:0009664(InterPro)
Sed14g0361 481 PRINTS Expansin signature 171 183 IPR002963 GO:0009664(InterPro)
Sed14g0361 481 PRINTS Expansin signature 219 240 IPR002963 GO:0009664(InterPro)
Sed14g0361 481 PRINTS Expansin signature 248 264 IPR002963 GO:0009664(InterPro)
Sed14g0361 481 PRINTS Expansin signature 130 147 IPR002963 GO:0009664(InterPro)
Sed14g0361 481 PRINTS Expansin signature 102 113 IPR002963 GO:0009664(InterPro)
Sed14g0361 481 PRINTS Expansin signature 75 89 IPR002963 GO:0009664(InterPro)
Sed14g0361 481 Gene3D Thaumatin 264 481 IPR037176 -
Sed14g0361 481 ProSiteProfiles Thaumatin family profile. 260 481 IPR001938 -
Sed14g0361 481 Pfam Lytic transglycolase 80 162 IPR009009 -
Sed14g0361 481 FunFam THAUMATIN-LIKE PROTEIN 1 261 481 - -
Sed14g0361 481 Pfam Expansin C-terminal domain 173 251 IPR007117 -
Sed14g0361 481 CDD TLP-PA 263 480 - -
Sed14g0361 481 CDD DPBB_EXPA_N 46 167 - -
Sed14g0361 481 SMART dpbb_1 80 162 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0819 Sed-Chr5:6450712 Sed14g0361 Sed-Chr14:3752296 3.40E-45 dispersed
Sed05g1952 Sed-Chr5:32873225 Sed14g0361 Sed-Chr14:3752296 1.70E-22 dispersed
Sed08g1152 Sed-Chr8:22666313 Sed14g0361 Sed-Chr14:3752296 2.50E-10 dispersed
Sed13g1561 Sed-Chr13:20815333 Sed14g0361 Sed-Chr14:3752296 3.20E-65 dispersed
Sed13g1562 Sed-Chr13:20815333 Sed14g0361 Sed-Chr14:3752296 4.20E-65 dispersed
Sed14g0361 Sed-Chr14:3752296 Sed14g0493 Sed-Chr14:4867194 1.10E-69 dispersed
Sed14g0361 Sed-Chr14:3752296 Sed02g0605 Sed-Chr2:43773608 3.30E-77 wgd
Sed14g0361 Sed-Chr14:3752296 Sed04g1403 Sed-Chr4:28529206 8.10E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0361 - - - 0.0