Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed14g0365 | ATGCCGATCCGTAGCATTGCAATTGGAAGGCCTGAAGAGGCTACAAGTCCCGATGCTTTGAAGGCTGGATTGGCTGAGTTTTTTTCCACTCTCATTTTCGTATTTGCCGGTCAGGGTTCCGGTATCGCCTTCGGTAAGCTTACCGATGGCGGTGCTGCAACCCCTTCCGGCCTTATCTCGGCCTCCATTGCCCATGGTTTTGCGCTTTTTGTTGCCGTGTCCGTCGGAGCTAACATCTCCGGGGGACACGTTAACCCTGCCGTTACCTTCGGCGCTTTCGTCGGTGGCAATATTTCTCTCCTACGTGGCATTATTTACTGGATTGCTCAGCTTCTTGGATCCGTTGTGGCTTGTTTGCTCCTTAAGTTCGTTACTGGCTTGCCCACCGGAAGCTTCGCCCTATCAGCAGGAGTCGGCGAATTGAACGCGTTGGTTTTCGAGATCGTGATGACGTTCGGATTGGTGTACACGGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACAATTGCGCCAATCGCCATCGGTTTCATCGTCGGAGCCAACATCCTGGCCGGCGGCGCCTTCACCGGAGCTTCCATGAACCCGGCCGTGGCCTTCGGACCGTCGGTCGTGAGCTGGTCCTGGGACAACCACTGGATCTACTGGGCCGGACCGCTCATCGGCGGTGGCCTCGCCGGAATCATCTACGAGTTCATTTTCATTTCCAACACCCACGAACAGCTCCCAACCACCGATTACTAA | 753 | 55.51 | MPIRSIAIGRPEEATSPDALKAGLAEFFSTLIFVFAGQGSGIAFGKLTDGGAATPSGLISASIAHGFALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGELNALVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWDNHWIYWAGPLIGGGLAGIIYEFIFISNTHEQLPTTDY | 250 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 3816260 | 3819106 | + | Sed0020504.1 | Sed14g0365 | 736083 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed14g0365 | 250 | Gene3D | Glycerol uptake facilitator protein. | 4 | 250 | IPR023271 | - | |
| Sed14g0365 | 250 | Pfam | Major intrinsic protein | 14 | 233 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed14g0365 | 250 | CDD | MIP | 21 | 236 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed14g0365 | 250 | ProSitePatterns | MIP family signature. | 83 | 91 | IPR022357 | - | |
| Sed14g0365 | 250 | SUPERFAMILY | Aquaporin-like | 13 | 246 | IPR023271 | - | |
| Sed14g0365 | 250 | FunFam | Probable aquaporin TIP1-1 | 4 | 250 | - | - | |
| Sed14g0365 | 250 | PANTHER | AQUAPORIN-8 | 5 | 246 | IPR034294 | GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
| Sed14g0365 | 250 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed14g0365 | 250 | PRINTS | Major intrinsic protein family signature | 102 | 121 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed14g0365 | 250 | PRINTS | Major intrinsic protein family signature | 146 | 164 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed14g0365 | 250 | PRINTS | Major intrinsic protein family signature | 65 | 89 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed14g0365 | 250 | PRINTS | Major intrinsic protein family signature | 216 | 236 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed14g0365 | 250 | PRINTS | Major intrinsic protein family signature | 179 | 201 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g2597 | Sed-Chr8:38329220 | Sed14g0365 | Sed-Chr14:3816260 | 4.40E-77 | dispersed | |
| Sed14g0365 | Sed-Chr14:3816260 | Sed14g0418 | Sed-Chr14:4333918 | 3.00E-34 | dispersed | |
| Sed01g2773 | Sed-Chr1:22949525 | Sed14g0365 | Sed-Chr14:3816260 | 6.10E-91 | transposed | |
| Sed09g1598 | Sed-Chr9:39474023 | Sed14g0365 | Sed-Chr14:3816260 | 1.50E-78 | transposed | |
| Sed14g0365 | Sed-Chr14:3816260 | Sed03g2041 | Sed-Chr3:14307620 | 1.40E-127 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed14g0365 | K09873 | - | csv:101204225 | 458.759 |