Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0373 ATGCTGGCCGGAACCTGCATTGTGCTGCTAGCTTTGCTGCTACTCGGTGCCGCTGCGGCTCTCAACGTCACTCTCCCGGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGCTTCCATAACAAGAAGGCAACAGCTCCAAATCTCACAGAAAGACGAATCATCTTCATCCTGCTACACCGGAAACCCGATCGACGATTGCTGGAAATGCGATCCAAACTGGCCAAACAACCGCCAGCGACTCGCCGATTGCGCGATAGGATTCGGGCAGTACGCTCTCGGCGGCAAGAACGGCGAGTTCTACATCGTCACCGACGATTCCGACGACGATCCGGTGAATCCAAAGCCCGGAACGTTACGATTCGCCGTGATTCAAACGCAGCCGCTCTGGATCGTGTTTCCGGCGAATATGCTCATCAAACTCTCGCAGGAACTCATCTTCAACAGCTACAAAACCCTAGATGGTCGCGGCGCCAATGTTCACATCGTCGGCGGTGGATGCATCACCTTGCAGTACATAAGCAATATCATCATACACAACATACATATCCACCATTGTCATCCATCAGGTAACACGATGATCCGATCGAGTCCGACACATTTTGGTTACCGAACAAAATCGGATGGCGACGGGATATCGATCTTCGGATCGAAGGACATATGGATTGACCATTGTTCGCTGTCGCATTGCAAGGATGGGCTGATCGATGCGGTGATGGGCTCCACAGGAATCACCATATCAAATAACTATTTCTCGCATCATGATGAGGTTATGTTGTTGGGTCACAGCGATAGCTACGCGCCAGACTCCGGGATGCAGGTAACAATAGCATTCAACCACTTCGGAGAGAAGCTAGTACAAAGAATGCCACGTTGCAGACTAGGATACATCCACGTGGTCAACAACGACTTCACCCAATGGGAAATGTATGCAATCGGCGGCTCCGGAAACCCCACGATCAACAGCCAAGGCAACCGCTACACGGCCCCGTACGACCGCAACGCCAAGGAGGTAACCAAGCGCGTTGAGACCTCAGAGTCCGAGTGGCGTGGCTGGAACTGGCGGTCCGAGGGTGACATCCTCATCAACGGCGCCTTCTTCGTCACCTCGGGCCAAGGCCTCGAGATCAAATACGAAAAGGCCTACAGTGTTGAGCCCAAGTCAGCTGCACTCATCGACCAGCTGACTTGGCACGCTGGCCCGCTCGGGGTCGGTGGAAGGGACAACAATTTGGGAATGTGGACCAGGGGTCCTAACGGCCAAGCCTTTGTTCTTGGGTCTGGGATGGATTACTCGGACGACATGTCGGAAAGCTTGACTCGGATTCGGTCTAGTTGTTTTGCCTCTCTTTGTGGTTTGGCACTTGCATTTGTTGTGTGA 1401 53.1 MLAGTCIVLLALLLLGAAAALNVTLPGQHPSPELVAQEVHRKVNASITRRQQLQISQKDESSSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDPVNPKPGTLRFAVIQTQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNIIIHNIHIHHCHPSGNTMIRSSPTHFGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYAPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSEGDILINGAFFVTSGQGLEIKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTRGPNGQAFVLGSGMDYSDDMSESLTRIRSSCFASLCGLALAFVV 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3871953 3878964 - Sed0021680.1 Sed14g0373 736091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0373 466 Gene3D - 68 410 IPR012334 -
Sed14g0373 466 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Sed14g0373 466 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Sed14g0373 466 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Sed14g0373 466 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Sed14g0373 466 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Sed14g0373 466 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Sed14g0373 466 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Sed14g0373 466 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Sed14g0373 466 FunFam Pectate lyase 68 410 - -
Sed14g0373 466 Pfam Pectate lyase 153 332 IPR002022 -
Sed14g0373 466 PANTHER PECTATE LYASE 18-RELATED 19 411 IPR045032 GO:0030570(InterPro)
Sed14g0373 466 SUPERFAMILY Pectin lyase-like 60 392 IPR011050 -
Sed14g0373 466 SMART amb_all 143 340 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2021 Sed-Chr6:44316771 Sed14g0373 Sed-Chr14:3871953 6.30E-180 dispersed
Sed12g0409 Sed-Chr12:2470045 Sed14g0373 Sed-Chr14:3871953 1.30E-149 dispersed
Sed12g0410 Sed-Chr12:2470045 Sed14g0373 Sed-Chr14:3871953 3.20E-149 dispersed
Sed14g0373 Sed-Chr14:3871953 Sed03g2037 Sed-Chr3:14287530 3.80E-248 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0373 K01728 - csv:101203012 850.506