Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0373 | ATGCTGGCCGGAACCTGCATTGTGCTGCTAGCTTTGCTGCTACTCGGTGCCGCTGCGGCTCTCAACGTCACTCTCCCGGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGCTTCCATAACAAGAAGGCAACAGCTCCAAATCTCACAGAAAGACGAATCATCTTCATCCTGCTACACCGGAAACCCGATCGACGATTGCTGGAAATGCGATCCAAACTGGCCAAACAACCGCCAGCGACTCGCCGATTGCGCGATAGGATTCGGGCAGTACGCTCTCGGCGGCAAGAACGGCGAGTTCTACATCGTCACCGACGATTCCGACGACGATCCGGTGAATCCAAAGCCCGGAACGTTACGATTCGCCGTGATTCAAACGCAGCCGCTCTGGATCGTGTTTCCGGCGAATATGCTCATCAAACTCTCGCAGGAACTCATCTTCAACAGCTACAAAACCCTAGATGGTCGCGGCGCCAATGTTCACATCGTCGGCGGTGGATGCATCACCTTGCAGTACATAAGCAATATCATCATACACAACATACATATCCACCATTGTCATCCATCAGGTAACACGATGATCCGATCGAGTCCGACACATTTTGGTTACCGAACAAAATCGGATGGCGACGGGATATCGATCTTCGGATCGAAGGACATATGGATTGACCATTGTTCGCTGTCGCATTGCAAGGATGGGCTGATCGATGCGGTGATGGGCTCCACAGGAATCACCATATCAAATAACTATTTCTCGCATCATGATGAGGTTATGTTGTTGGGTCACAGCGATAGCTACGCGCCAGACTCCGGGATGCAGGTAACAATAGCATTCAACCACTTCGGAGAGAAGCTAGTACAAAGAATGCCACGTTGCAGACTAGGATACATCCACGTGGTCAACAACGACTTCACCCAATGGGAAATGTATGCAATCGGCGGCTCCGGAAACCCCACGATCAACAGCCAAGGCAACCGCTACACGGCCCCGTACGACCGCAACGCCAAGGAGGTAACCAAGCGCGTTGAGACCTCAGAGTCCGAGTGGCGTGGCTGGAACTGGCGGTCCGAGGGTGACATCCTCATCAACGGCGCCTTCTTCGTCACCTCGGGCCAAGGCCTCGAGATCAAATACGAAAAGGCCTACAGTGTTGAGCCCAAGTCAGCTGCACTCATCGACCAGCTGACTTGGCACGCTGGCCCGCTCGGGGTCGGTGGAAGGGACAACAATTTGGGAATGTGGACCAGGGGTCCTAACGGCCAAGCCTTTGTTCTTGGGTCTGGGATGGATTACTCGGACGACATGTCGGAAAGCTTGACTCGGATTCGGTCTAGTTGTTTTGCCTCTCTTTGTGGTTTGGCACTTGCATTTGTTGTGTGA | 1401 | 53.1 | MLAGTCIVLLALLLLGAAAALNVTLPGQHPSPELVAQEVHRKVNASITRRQQLQISQKDESSSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDPVNPKPGTLRFAVIQTQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNIIIHNIHIHHCHPSGNTMIRSSPTHFGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYAPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSEGDILINGAFFVTSGQGLEIKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTRGPNGQAFVLGSGMDYSDDMSESLTRIRSSCFASLCGLALAFVV | 466 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 3871953 | 3878964 | - | Sed0021680.1 | Sed14g0373 | 736091 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0373 | 466 | Gene3D | - | 68 | 410 | IPR012334 | - | |
Sed14g0373 | 466 | PRINTS | Pollen allergen Amb family signature | 215 | 236 | IPR018082 | - | |
Sed14g0373 | 466 | PRINTS | Pollen allergen Amb family signature | 359 | 383 | IPR018082 | - | |
Sed14g0373 | 466 | PRINTS | Pollen allergen Amb family signature | 388 | 411 | IPR018082 | - | |
Sed14g0373 | 466 | PRINTS | Pollen allergen Amb family signature | 91 | 108 | IPR018082 | - | |
Sed14g0373 | 466 | PRINTS | Pollen allergen Amb family signature | 115 | 140 | IPR018082 | - | |
Sed14g0373 | 466 | PRINTS | Pollen allergen Amb family signature | 151 | 167 | IPR018082 | - | |
Sed14g0373 | 466 | PRINTS | Pollen allergen Amb family signature | 295 | 314 | IPR018082 | - | |
Sed14g0373 | 466 | PRINTS | Pollen allergen Amb family signature | 317 | 336 | IPR018082 | - | |
Sed14g0373 | 466 | FunFam | Pectate lyase | 68 | 410 | - | - | |
Sed14g0373 | 466 | Pfam | Pectate lyase | 153 | 332 | IPR002022 | - | |
Sed14g0373 | 466 | PANTHER | PECTATE LYASE 18-RELATED | 19 | 411 | IPR045032 | GO:0030570(InterPro) | |
Sed14g0373 | 466 | SUPERFAMILY | Pectin lyase-like | 60 | 392 | IPR011050 | - | |
Sed14g0373 | 466 | SMART | amb_all | 143 | 340 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g2021 | Sed-Chr6:44316771 | Sed14g0373 | Sed-Chr14:3871953 | 6.30E-180 | dispersed | |
Sed12g0409 | Sed-Chr12:2470045 | Sed14g0373 | Sed-Chr14:3871953 | 1.30E-149 | dispersed | |
Sed12g0410 | Sed-Chr12:2470045 | Sed14g0373 | Sed-Chr14:3871953 | 3.20E-149 | dispersed | |
Sed14g0373 | Sed-Chr14:3871953 | Sed03g2037 | Sed-Chr3:14287530 | 3.80E-248 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0373 | K01728 | - | csv:101203012 | 850.506 |