Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0397 ATGGCCCAAGTCGAGACCATTTGCAAGAGCTCACCTCATGCCGACCCACTTAATTGGGGTTGGGCTGCTGAGTCGCTCAAGGGAAGCCATCTCGATGAGGTCAAACGCATGGTCGAAGAGTATCGAAGGCCTATTGTCAAGCTTGGAGGTGAGACACTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGTGATAACGATGTGATGGTGGAATTGGCTGAGTCTGCTCGAGCTGGTGTTAAAGCTAGCAGTGATTGGGTTATGGATAACATGAGCAAAGGCACTGATAGTTATGGTGTTACTACGGGCTTTGGTGCTACTTCACATAGAAGGACCAAACAAGGTGGTGCTCTTCAGAAGGAGTTGATTCGATTTTTGAATGCTGGCATCTTTGGGATTGGGGCTGAGTCGAGTCATGCTTTGCCCCACTCGGCTACTAGGGCCGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCTGGTATTAGATTTGAGATTTTGGAAGCTATAACCAAACTTTTGAATCATAACATCACTCCATGTTTGCCGCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTATATCGCTGGATTGCTTACTGGCCGACCGAACTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAGATAAGGCTTTCCAACAAGCTAATATTTCTACTGGGTTTTTTGAGTTGCAGCCTAAAGAAGGTCTTGCTCTAGTCAATGGTACTGCTGTTGGTTCTGGGTTGGCTTCTATAGTTCTCTTTGAAGCAAATATTTTAGCGGTTTTGTCTGAGATATTGTCTGCGATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTTACTGATTATTTGACTCACAAGTTGAAGCATCACCCAGGTCAGATTGAAGCAGCTGCAATCATGGAGCACATTTTGGACGGAAGCTCTTACATGAAAACAGCCAAGAAATTGCATGAAATGGATCCACTCCAAAAACCCAAACAAGATCGTTATGCTCTTAGGACTTCACCTCAATGGCTTGGTCCCTTGATTGAAGTAATTCGCTTTTCTACCAAGTCTATTGAACGGGAGATCAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCACGGAGGTAACTTTCAAGGGACGCCGATTGGAGTTTCCATGGACAACACTCGCTTGGCAATTGCTTCAATTGGGAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAATGATTTTTACAACAATGGTTTGCCATCGAATCTTTCTGCAAGTAGAAATCCTAGCTTGGATTATGGGTTTAAAGGTAGTGAAATTGCTATGGCTTCATACTGCTCTGAGCTCCAATACCTTGCAAATCCAGTGACAACTCATGTCCAAAGTGCCGAGCAACACAATCAGGATGTTAACTCTCTTGGTTTAATCTCTTCTAGAAAAACAGCTGAAGCGATTGATATTTTGAAACTTATGTCATCCACATTTCTTGTTGCACTTTGCCAAGCCATTGACTTGAGGCACTTGGAGGAAAACTTAAAGAGCACGGTTAAAAGTATTGTGAGCCAAGTAGCCAAGAAAGTATTGACCACATCTTCTAATGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGATTTACTCAAAGTGGTCGACAGAGAATACACATTTGCCTACGTCGATGATGCATGCAGTGCCACTTACCCATTGATGCAGAAATTAAGACAAGTTCTTGTTGAGCATGCCCTCACCAATGATGAAAGTGAAAAGAACGCGAACACTTCCATCTTTCAGAAAATTAATGCTTTTGAAGAGGAATTAAAAGCAGTTTTACCGAAGGAAATTGAAAATTCACGGTTGGCATACGAGAGCGGAAACTCTAAGATTGAAAATCAAATTAAGGATTGCAGATCTTATCCACTATACAAATTTGTGAGGGAGGAGTTGGGAACAAACTTGTTGACAGGTGAAAGGGTGATATCTCCTGGAGAAGAATGCGAGAAGGTATTTACAGCTTTATGTCAAGGAAAAATGATTGACTCTATTCTAGACTGCTTGAAAGAATGGAATGGTGCTCCAATTCCCATCTGCTAG 2121 42.72 MAQVETICKSSPHADPLNWGWAAESLKGSHLDEVKRMVEEYRRPIVKLGGETLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMDNMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGIGAESSHALPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDADKAFQQANISTGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALTNDESEKNANTSIFQKINAFEEELKAVLPKEIENSRLAYESGNSKIENQIKDCRSYPLYKFVREELGTNLLTGERVISPGEECEKVFTALCQGKMIDSILDCLKEWNGAPIPIC 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4102041 4110204 + Sed0018325.1 Sed14g0397 736115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0397 706 FunFam Phenylalanine ammonia-lyase 253 562 - -
Sed14g0397 706 FunFam Phenylalanine ammonia-lyase 519 640 - -
Sed14g0397 706 NCBIfam phenylalanine ammonia-lyase 15 696 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Sed14g0397 706 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 188 204 IPR022313 GO:0016841(InterPro)
Sed14g0397 706 Gene3D - 519 640 IPR023144 -
Sed14g0397 706 CDD PAL-HAL 51 516 IPR001106 -
Sed14g0397 706 FunFam Phenylalanine ammonia-lyase 6 252 - -
Sed14g0397 706 Pfam Aromatic amino acid lyase 53 532 IPR001106 -
Sed14g0397 706 Gene3D Fumarase/aspartase (Central domain) 253 701 - -
Sed14g0397 706 Gene3D - 7 252 IPR024083 -
Sed14g0397 706 PANTHER HISTIDINE AMMONIA-LYASE 10 706 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Sed14g0397 706 SUPERFAMILY L-aspartase-like 15 706 IPR008948 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2018 Sed-Chr3:14102612 Sed14g0397 Sed-Chr14:4102041 0.00E+00 dispersed
Sed12g0524 Sed-Chr12:3174200 Sed14g0397 Sed-Chr14:4102041 0.00E+00 dispersed
Sed12g0525 Sed-Chr12:3180763 Sed14g0397 Sed-Chr14:4102041 0.00E+00 dispersed
Sed14g0397 Sed-Chr14:4102041 Sed14g0399 Sed-Chr14:4116312 0.00E+00 dispersed
Sed14g0397 Sed-Chr14:4102041 Sed14g0398 Sed-Chr14:4112124 0.00E+00 tandem
Sed10g1807 Sed-Chr10:35128698 Sed14g0397 Sed-Chr14:4102041 0.00E+00 transposed
Sed14g0397 Sed-Chr14:4102041 Sed03g2015 Sed-Chr3:14065462 0.00E+00 wgd
Sed14g0397 Sed-Chr14:4102041 Sed05g2829 Sed-Chr5:39482796 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0397 K10775 - csv:101218144 1285.78