Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0397 | ATGGCCCAAGTCGAGACCATTTGCAAGAGCTCACCTCATGCCGACCCACTTAATTGGGGTTGGGCTGCTGAGTCGCTCAAGGGAAGCCATCTCGATGAGGTCAAACGCATGGTCGAAGAGTATCGAAGGCCTATTGTCAAGCTTGGAGGTGAGACACTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGTGATAACGATGTGATGGTGGAATTGGCTGAGTCTGCTCGAGCTGGTGTTAAAGCTAGCAGTGATTGGGTTATGGATAACATGAGCAAAGGCACTGATAGTTATGGTGTTACTACGGGCTTTGGTGCTACTTCACATAGAAGGACCAAACAAGGTGGTGCTCTTCAGAAGGAGTTGATTCGATTTTTGAATGCTGGCATCTTTGGGATTGGGGCTGAGTCGAGTCATGCTTTGCCCCACTCGGCTACTAGGGCCGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCTGGTATTAGATTTGAGATTTTGGAAGCTATAACCAAACTTTTGAATCATAACATCACTCCATGTTTGCCGCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTATATCGCTGGATTGCTTACTGGCCGACCGAACTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAGATAAGGCTTTCCAACAAGCTAATATTTCTACTGGGTTTTTTGAGTTGCAGCCTAAAGAAGGTCTTGCTCTAGTCAATGGTACTGCTGTTGGTTCTGGGTTGGCTTCTATAGTTCTCTTTGAAGCAAATATTTTAGCGGTTTTGTCTGAGATATTGTCTGCGATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTTACTGATTATTTGACTCACAAGTTGAAGCATCACCCAGGTCAGATTGAAGCAGCTGCAATCATGGAGCACATTTTGGACGGAAGCTCTTACATGAAAACAGCCAAGAAATTGCATGAAATGGATCCACTCCAAAAACCCAAACAAGATCGTTATGCTCTTAGGACTTCACCTCAATGGCTTGGTCCCTTGATTGAAGTAATTCGCTTTTCTACCAAGTCTATTGAACGGGAGATCAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCACGGAGGTAACTTTCAAGGGACGCCGATTGGAGTTTCCATGGACAACACTCGCTTGGCAATTGCTTCAATTGGGAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAATGATTTTTACAACAATGGTTTGCCATCGAATCTTTCTGCAAGTAGAAATCCTAGCTTGGATTATGGGTTTAAAGGTAGTGAAATTGCTATGGCTTCATACTGCTCTGAGCTCCAATACCTTGCAAATCCAGTGACAACTCATGTCCAAAGTGCCGAGCAACACAATCAGGATGTTAACTCTCTTGGTTTAATCTCTTCTAGAAAAACAGCTGAAGCGATTGATATTTTGAAACTTATGTCATCCACATTTCTTGTTGCACTTTGCCAAGCCATTGACTTGAGGCACTTGGAGGAAAACTTAAAGAGCACGGTTAAAAGTATTGTGAGCCAAGTAGCCAAGAAAGTATTGACCACATCTTCTAATGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGATTTACTCAAAGTGGTCGACAGAGAATACACATTTGCCTACGTCGATGATGCATGCAGTGCCACTTACCCATTGATGCAGAAATTAAGACAAGTTCTTGTTGAGCATGCCCTCACCAATGATGAAAGTGAAAAGAACGCGAACACTTCCATCTTTCAGAAAATTAATGCTTTTGAAGAGGAATTAAAAGCAGTTTTACCGAAGGAAATTGAAAATTCACGGTTGGCATACGAGAGCGGAAACTCTAAGATTGAAAATCAAATTAAGGATTGCAGATCTTATCCACTATACAAATTTGTGAGGGAGGAGTTGGGAACAAACTTGTTGACAGGTGAAAGGGTGATATCTCCTGGAGAAGAATGCGAGAAGGTATTTACAGCTTTATGTCAAGGAAAAATGATTGACTCTATTCTAGACTGCTTGAAAGAATGGAATGGTGCTCCAATTCCCATCTGCTAG | 2121 | 42.72 | MAQVETICKSSPHADPLNWGWAAESLKGSHLDEVKRMVEEYRRPIVKLGGETLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMDNMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGIGAESSHALPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDADKAFQQANISTGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALTNDESEKNANTSIFQKINAFEEELKAVLPKEIENSRLAYESGNSKIENQIKDCRSYPLYKFVREELGTNLLTGERVISPGEECEKVFTALCQGKMIDSILDCLKEWNGAPIPIC | 706 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 4102041 | 4110204 | + | Sed0018325.1 | Sed14g0397 | 736115 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0397 | 706 | FunFam | Phenylalanine ammonia-lyase | 253 | 562 | - | - | |
Sed14g0397 | 706 | FunFam | Phenylalanine ammonia-lyase | 519 | 640 | - | - | |
Sed14g0397 | 706 | NCBIfam | phenylalanine ammonia-lyase | 15 | 696 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Sed14g0397 | 706 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 188 | 204 | IPR022313 | GO:0016841(InterPro) | |
Sed14g0397 | 706 | Gene3D | - | 519 | 640 | IPR023144 | - | |
Sed14g0397 | 706 | CDD | PAL-HAL | 51 | 516 | IPR001106 | - | |
Sed14g0397 | 706 | FunFam | Phenylalanine ammonia-lyase | 6 | 252 | - | - | |
Sed14g0397 | 706 | Pfam | Aromatic amino acid lyase | 53 | 532 | IPR001106 | - | |
Sed14g0397 | 706 | Gene3D | Fumarase/aspartase (Central domain) | 253 | 701 | - | - | |
Sed14g0397 | 706 | Gene3D | - | 7 | 252 | IPR024083 | - | |
Sed14g0397 | 706 | PANTHER | HISTIDINE AMMONIA-LYASE | 10 | 706 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Sed14g0397 | 706 | SUPERFAMILY | L-aspartase-like | 15 | 706 | IPR008948 | GO:0003824(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2018 | Sed-Chr3:14102612 | Sed14g0397 | Sed-Chr14:4102041 | 0.00E+00 | dispersed | |
Sed12g0524 | Sed-Chr12:3174200 | Sed14g0397 | Sed-Chr14:4102041 | 0.00E+00 | dispersed | |
Sed12g0525 | Sed-Chr12:3180763 | Sed14g0397 | Sed-Chr14:4102041 | 0.00E+00 | dispersed | |
Sed14g0397 | Sed-Chr14:4102041 | Sed14g0399 | Sed-Chr14:4116312 | 0.00E+00 | dispersed | |
Sed14g0397 | Sed-Chr14:4102041 | Sed14g0398 | Sed-Chr14:4112124 | 0.00E+00 | tandem | |
Sed10g1807 | Sed-Chr10:35128698 | Sed14g0397 | Sed-Chr14:4102041 | 0.00E+00 | transposed | |
Sed14g0397 | Sed-Chr14:4102041 | Sed03g2015 | Sed-Chr3:14065462 | 0.00E+00 | wgd | |
Sed14g0397 | Sed-Chr14:4102041 | Sed05g2829 | Sed-Chr5:39482796 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0397 | K10775 | - | csv:101218144 | 1285.78 |