Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0399 ATGGCACCCATCGAGCAAATCAATGACGGTTTCTGCACCGTTACTGCTCATCCTGACCCGCTTAACTGGGGTTTGGCAGCTGAGTCGCTCAAGGGAAGCCATCTCGATGAGGTAAAGCGCATGGTCGAGGAGTACAGGAGGCCCCTTGTCAAGCTTGGCGGTGAGACGCTCACCATTTCTCAAGTTGCTGCCATCGCCACTCGTGATAACGATGTGATTGTGGAATTGGCCGAGTCTGCTCGAGCTGGTGTTAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGCAAAGGCACAGATAGTTATGGTGTTACTACTGGCTTTGGTGCTACCTCACATCGGAGGACGAAACAAGGTGGTGCTCTTCAAAAGGAGTTGATTCGATTCTTGAATGCTGGGATTTTTGGATCTGGGGCTGAGTCGAGCCATGTTTTGCCTCACTCGGCTACTAGAGCGGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCAGGTATTAGATTTGAGATTTTGGAAGCTATAGCCAAACTCTTGAACAACAACATCACTCCATGCTTGCCTCTCCGTGGAACCATCACTGCTTCTGGAGATCTTGTTCCTCTTTCATACATAGCTGGATTGCTAACTGGTCGACCAAACTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTAATGCAAATGAGGCTTTCCAACAAGCAGGTATTCCTTTTGGGTTTTTTGAGTTGCAGCCAAAAGAAGGTCTTGCTCTCGTTAATGGTACCGCTGTTGGTTCTGGGTTGGCTTCTATTGTTCTCTTTGAGGCCAATATTTTAGCTGTTTTGTCTGAGATTTTGTCAGCTATATTTGCTGAGGTTATGCAAGGTAAACCTGAATTTACTGACTATTTGACTCATAAGTTAAAGCACCATCCTGGTCAAATTGAAGCTGCTGCAATTATGGAGCATATTTTGGATGGGAGTTCTTACATGAAGACTGCTAAAAAATTACATGAAATGGATCCTCTTCAGAAGCCAAAACAAGACCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAAGTTATTCGATTCTCAACAAAGTCAATTGAGCGGGAGATTAACTCAGTAAACGACAATCCTTTGATTGATGTTTCAAGGAACAAAGCTTTACATGGAGGAAATTTCCAAGGAACTCCAATTGGAGTCTCGATGGACAACACTCGTTTAGCTGTTGCTTCAATTGGAAAGCTTATGTTTGCTCAATTCTCTGAACTTGTCAACGACTTCTACAACAATGGTTTACCTTCTAATCTTTCGGCAAGTAGAAATCCAAGCTTGGATTATGGGTTTAAAGGTGCTGAAATAGCCATGGCTTCATATTGTTCAGAGCTTCAATACCTTGCAAATCCAGTGACAAGTCATGTTCAAAGTGCTGAACAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACTGCTGAAGCCCTTGACATTTTGAAGCTTATGTCTTCCACGTTTTTGGTTGCTCTTTGCCAAGCCATTGACTTAAGGCATTTGGAAGAAAACTTGAAGAGTGTAGTGAAGAACTCCGTTAGTCTAGTGGCCAAGAAAGTTCTCACCACAAGTACAAATGGTGCACTTCACCCCTCAAGGTTCTGTGAGAAAGATTTACTACAGGTGGTTGACAGAGAATACACCTTTGCTTACGTTGATGATGCATGTAGTGCTACTTACCCATTGATGCAAAAATTGAGGCAAGTTCTTGTTGAACATGCTTTGAAAAATGGTGAAGACGAAAAGAACACAAACACTTCAATCTTCCAAAAGATTGGAGCTTTTGAGGAGGAATTGAAAGCCGTCTTGCCCAAAGAAGTAGAAAACGCTAGATTGTCCTACGAAAATGGAACGTTAACCATTGAAAATCAAATTAAAGAATGCAGATCTTATCCACTATACAAGTTTGTGAGAGAAGAGTTGGGAACTGGATTGTTGACCGGAGAGAAGGTGATATCTCCCGGAGAAGAGTGTGAAAAAGTATTCACGGCTCTTTGTCAAGGAAAGATGATCGATTCAATTTTAGAATGCTTAAAAGAGTGGAATGGTGCTCCAATTCCCATCTGCTAG 2133 42.33 MAPIEQINDGFCTVTAHPDPLNWGLAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNDVIVELAESARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESSHVLPHSATRAAMLVRINTLLQGYSGIRFEILEAIAKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLNANEAFQQAGIPFGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEALDILKLMSSTFLVALCQAIDLRHLEENLKSVVKNSVSLVAKKVLTTSTNGALHPSRFCEKDLLQVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALKNGEDEKNTNTSIFQKIGAFEEELKAVLPKEVENARLSYENGTLTIENQIKECRSYPLYKFVREELGTGLLTGEKVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4116312 4118722 - Sed0025747.1 Sed14g0399 736117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0399 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841(InterPro)
Sed14g0399 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Sed14g0399 710 Gene3D - 11 256 IPR024083 -
Sed14g0399 710 Pfam Aromatic amino acid lyase 57 528 IPR001106 -
Sed14g0399 710 FunFam Phenylalanine ammonia-lyase 11 256 - -
Sed14g0399 710 FunFam Phenylalanine ammonia-lyase 257 550 - -
Sed14g0399 710 NCBIfam phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Sed14g0399 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
Sed14g0399 710 Gene3D - 523 644 IPR023144 -
Sed14g0399 710 PANTHER HISTIDINE AMMONIA-LYASE 17 710 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Sed14g0399 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824(InterPro)
Sed14g0399 710 CDD PAL-HAL 55 520 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2015 Sed-Chr3:14065462 Sed14g0399 Sed-Chr14:4116312 0.00E+00 dispersed
Sed03g2016 Sed-Chr3:14082471 Sed14g0399 Sed-Chr14:4116312 0.00E+00 dispersed
Sed03g2017 Sed-Chr3:14094007 Sed14g0399 Sed-Chr14:4116312 0.00E+00 dispersed
Sed07g2256 Sed-Chr7:38456346 Sed14g0399 Sed-Chr14:4116312 0.00E+00 dispersed
Sed12g1727 Sed-Chr12:28440125 Sed14g0399 Sed-Chr14:4116312 4.50E-240 dispersed
Sed14g0397 Sed-Chr14:4102041 Sed14g0399 Sed-Chr14:4116312 0.00E+00 dispersed
Sed14g0398 Sed-Chr14:4112124 Sed14g0399 Sed-Chr14:4116312 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0399 K10775 - csv:101218144 1327.0