Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0403 | ATGTCTAGTTCTAATTCTCGAAGATGGAGATCAGCTACAGTAAGGTTTCAAGACGAGGAGCTCGAGAACGGAGGAGCTGAGAGGAAGGAGTGGGAGAGGGGGAAGCTGAAAGAGGTCGGAGAGATGTCGAGGGTGTTTTCGGAGGATTACGACGTGGTGGATCGAAGGGTGTTGGATCCAAGGCTGCCAATATTGAACAGATGGAAGAGGGTGTTCTTGGTAGCATGTTTGGTGTCACTATTCGTGGACCCAGTTTTTTTTTTCTTGCCTGTGGTGAGGGTAGAGGAAGGGTGCGTGGAAATGAGCAGAGGGCTCGGGGCAACACTGACGGTGGTGCGATCGATGGCGGATGTGTTCTACGTAATGCAGATTGTGGTTCGGTTCATGACAGCTTATGTGGCTCCGTCGTCGAGGATCTTCGGGAGAGGGGATCTTGTCATTGATCCTTCTAAGATTGCTGCAAATTATCTTCTTTTCGACTTTTGGCTTCATTTTGCTGCTGCATTGCCTCTTCCTCAGGCATTCATATGGGCTGCAATTCCAAACATTAGAGGTTCAAACATGACCTCATGGAGTTACATTCTTCGCTTCTCCATCCTCTTCCAATACTTTCTAAGGCTCTATCTCATCTTCCCGCTATCTGATCAAATCATTCAAGCGACGGGCGTTCTCATGAAAACCGCATGGGCGGGAGCAGTTTATAACCTAATGCTCTTCATGCTCGCAAGTCACGTTTTGGGGTCGAGTTGGTACCTCTTATCCGTGGGAAGACAAATGGAATGCTGGAAAAGAGTTTGTAGTTTGGGGCAATTGGATTGCCAATATGAGTTTTTTGATTGTAAAGTTGTGGGAAACCCTAGTAGAGCTGCTTGGTTTGAAGCAACCAATATCTCAAATTTGTGCCATCCAACTTCCACCACTTTCTTCCATTTTGGGATTTTTTCTGATTCTTTTGTCTCTACTTCTTCCACCTTCTTTAATAGGTACTTCTATTGCTTTTGGTGGGGCTTGAGGAATTTAAGCTCTCTAGGACAAAATTTGCTAACAAGTAGCAATGTGGGAGAAATCAGCTTTGCCATTGTGATAGCAATTGTGGGTTTGGTGCTTTTCGCACTTCTTATAGGAAATATGCAAACTTATCTTCAATCAACAACTTTGAGATTGGAAGAATGGAGGGTTAGAAGAACAGACACAGAGCAATGGATGCAGCATAGGCAGCTGCCCTATGAACTCAAACAAAGTGTTAGAAAATATGACCAATTTAGATGGATTGCAACTCGTGGAGTTGATGAAGAACACATTCTTAAAGGCCTTCCTCTGGACCTTAGACGAGACATCAAACGCCACCTTTGCCTCGATCTCGTTCGTCAGGTGCCATTATTTGACGAAATGGAGGAAAGAATGTTAGAAGCAATATGCGAAAGGTTAAGACCATGTTTAAGCACTTCCAACACGTGCCTAATCCGGGAAGGCGACCCAGTCAACGAGATGCTATTCATTATCAGAGGCCACTTGGACTCCCACACTACAAATGGCGGCCGGACCGGGTTCTTCAACTCGACTCGACTCGGCCCGAGCGACTTCTGCGGCGAGGAGCTACTCCCATGGGCCCTGGACCCTCGGGCCACCGCCGCGGTCCTCCCATCCTCGACCCGCACCGTCAGGGCTATAACCGAAGTCGAAGCCTTTGCCCTCATTGCACACGACTTGAAGTTCGTCGCCGCCCAATTCCGCCGCCTCCATAGCAAGCAGGTTCGGGCCACTTTCCGGTTCCACTCGACCCAATGGCGGACCTGGGCAGCTTGTTTCATTCAAGCCGCTTGGTTTAGCTACAAGAAACGGAAAGAGGCGGCGGCGGCCGCCGAGGTCGAGAAGGAGATTGTTGTTAGGAATTATGTGGTGAATTGTAGGAGGGTTGGTGGTGGCGACGGCGGCCGGAGTAGGCGGTGTTGCAACAGTGGGGAGATTAATGCGGTTCATGGCCGGTCGTTGTTGAAGCCGGTTGAACCGGACTTCTCAATCGAAGAGAGATAA | 2034 | 48.67 | MSSSNSRRWRSATVRFQDEELENGGAERKEWERGKLKEVGEMSRVFSEDYDVVDRRVLDPRLPILNRWKRVFLVACLVSLFVDPVFFFLPVVRVEEGCVEMSRGLGATLTVVRSMADVFYVMQIVVRFMTAYVAPSSRIFGRGDLVIDPSKIAANYLLFDFWLHFAAALPLPQAFIWAAIPNIRGSNMTSWSYILRFSILFQYFLRLYLIFPLSDQIIQATGVLMKTAWAGAVYNLMLFMLASHVLGSSWYLLSVGRQMECWKRVCSLGQLDCQYEFFDCKVVGNPSRAAWFEATNISNLCHPTSTTFFHFGIFSDSFVSTSSTFFNRYFYCFWWGLRNLSSLGQNLLTSSNVGEISFAIVIAIVGLVLFALLIGNMQTYLQSTTLRLEEWRVRRTDTEQWMQHRQLPYELKQSVRKYDQFRWIATRGVDEEHILKGLPLDLRRDIKRHLCLDLVRQVPLFDEMEERMLEAICERLRPCLSTSNTCLIREGDPVNEMLFIIRGHLDSHTTNGGRTGFFNSTRLGPSDFCGEELLPWALDPRATAAVLPSSTRTVRAITEVEAFALIAHDLKFVAAQFRRLHSKQVRATFRFHSTQWRTWAACFIQAAWFSYKKRKEAAAAAEVEKEIVVRNYVVNCRRVGGGDGGRSRRCCNSGEINAVHGRSLLKPVEPDFSIEER | 677 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 4168233 | 4174286 | + | Sed0020712.1 | Sed14g0403 | 736121 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0403 | 677 | Pfam | Ion transport protein | 70 | 387 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed14g0403 | 677 | SUPERFAMILY | Voltage-gated potassium channels | 66 | 382 | - | - | |
Sed14g0403 | 677 | Gene3D | - | 78 | 384 | - | - | |
Sed14g0403 | 677 | Gene3D | Helix hairpin bin | 388 | 451 | - | - | |
Sed14g0403 | 677 | FunFam | Cyclic nucleotide-gated ion channel 1 | 458 | 577 | - | - | |
Sed14g0403 | 677 | SMART | cnmp_10 | 460 | 592 | IPR000595 | - | |
Sed14g0403 | 677 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 460 | 546 | IPR000595 | - | |
Sed14g0403 | 677 | PRINTS | EAG/ELK/ERG potassium channel family signature | 241 | 251 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed14g0403 | 677 | PRINTS | EAG/ELK/ERG potassium channel family signature | 355 | 366 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed14g0403 | 677 | PRINTS | EAG/ELK/ERG potassium channel family signature | 124 | 133 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed14g0403 | 677 | PRINTS | EAG/ELK/ERG potassium channel family signature | 373 | 382 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed14g0403 | 677 | PRINTS | EAG/ELK/ERG potassium channel family signature | 329 | 346 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed14g0403 | 677 | PRINTS | EAG/ELK/ERG potassium channel family signature | 423 | 430 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed14g0403 | 677 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 38 | 625 | - | - | |
Sed14g0403 | 677 | FunFam | Cyclic nucleotide-gated ion channel 1 | 387 | 451 | - | - | |
Sed14g0403 | 677 | Gene3D | Jelly Rolls | 458 | 579 | IPR014710 | - | |
Sed14g0403 | 677 | SUPERFAMILY | cAMP-binding domain-like | 390 | 580 | IPR018490 | - | |
Sed14g0403 | 677 | CDD | CAP_ED | 460 | 592 | IPR000595 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2842 | Sed-Chr5:39547368 | Sed14g0403 | Sed-Chr14:4168233 | 7.80E-229 | dispersed | |
Sed13g2104 | Sed-Chr13:25724430 | Sed14g0403 | Sed-Chr14:4168233 | 1.40E-183 | dispersed | |
Sed13g2105 | Sed-Chr13:25724430 | Sed14g0403 | Sed-Chr14:4168233 | 1.40E-183 | dispersed | |
Sed14g0403 | Sed-Chr14:4168233 | Sed05g2841 | Sed-Chr5:39547040 | 1.20E-229 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0403 | K05391 | - | csv:101221856 | 917.146 |