Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0403 ATGTCTAGTTCTAATTCTCGAAGATGGAGATCAGCTACAGTAAGGTTTCAAGACGAGGAGCTCGAGAACGGAGGAGCTGAGAGGAAGGAGTGGGAGAGGGGGAAGCTGAAAGAGGTCGGAGAGATGTCGAGGGTGTTTTCGGAGGATTACGACGTGGTGGATCGAAGGGTGTTGGATCCAAGGCTGCCAATATTGAACAGATGGAAGAGGGTGTTCTTGGTAGCATGTTTGGTGTCACTATTCGTGGACCCAGTTTTTTTTTTCTTGCCTGTGGTGAGGGTAGAGGAAGGGTGCGTGGAAATGAGCAGAGGGCTCGGGGCAACACTGACGGTGGTGCGATCGATGGCGGATGTGTTCTACGTAATGCAGATTGTGGTTCGGTTCATGACAGCTTATGTGGCTCCGTCGTCGAGGATCTTCGGGAGAGGGGATCTTGTCATTGATCCTTCTAAGATTGCTGCAAATTATCTTCTTTTCGACTTTTGGCTTCATTTTGCTGCTGCATTGCCTCTTCCTCAGGCATTCATATGGGCTGCAATTCCAAACATTAGAGGTTCAAACATGACCTCATGGAGTTACATTCTTCGCTTCTCCATCCTCTTCCAATACTTTCTAAGGCTCTATCTCATCTTCCCGCTATCTGATCAAATCATTCAAGCGACGGGCGTTCTCATGAAAACCGCATGGGCGGGAGCAGTTTATAACCTAATGCTCTTCATGCTCGCAAGTCACGTTTTGGGGTCGAGTTGGTACCTCTTATCCGTGGGAAGACAAATGGAATGCTGGAAAAGAGTTTGTAGTTTGGGGCAATTGGATTGCCAATATGAGTTTTTTGATTGTAAAGTTGTGGGAAACCCTAGTAGAGCTGCTTGGTTTGAAGCAACCAATATCTCAAATTTGTGCCATCCAACTTCCACCACTTTCTTCCATTTTGGGATTTTTTCTGATTCTTTTGTCTCTACTTCTTCCACCTTCTTTAATAGGTACTTCTATTGCTTTTGGTGGGGCTTGAGGAATTTAAGCTCTCTAGGACAAAATTTGCTAACAAGTAGCAATGTGGGAGAAATCAGCTTTGCCATTGTGATAGCAATTGTGGGTTTGGTGCTTTTCGCACTTCTTATAGGAAATATGCAAACTTATCTTCAATCAACAACTTTGAGATTGGAAGAATGGAGGGTTAGAAGAACAGACACAGAGCAATGGATGCAGCATAGGCAGCTGCCCTATGAACTCAAACAAAGTGTTAGAAAATATGACCAATTTAGATGGATTGCAACTCGTGGAGTTGATGAAGAACACATTCTTAAAGGCCTTCCTCTGGACCTTAGACGAGACATCAAACGCCACCTTTGCCTCGATCTCGTTCGTCAGGTGCCATTATTTGACGAAATGGAGGAAAGAATGTTAGAAGCAATATGCGAAAGGTTAAGACCATGTTTAAGCACTTCCAACACGTGCCTAATCCGGGAAGGCGACCCAGTCAACGAGATGCTATTCATTATCAGAGGCCACTTGGACTCCCACACTACAAATGGCGGCCGGACCGGGTTCTTCAACTCGACTCGACTCGGCCCGAGCGACTTCTGCGGCGAGGAGCTACTCCCATGGGCCCTGGACCCTCGGGCCACCGCCGCGGTCCTCCCATCCTCGACCCGCACCGTCAGGGCTATAACCGAAGTCGAAGCCTTTGCCCTCATTGCACACGACTTGAAGTTCGTCGCCGCCCAATTCCGCCGCCTCCATAGCAAGCAGGTTCGGGCCACTTTCCGGTTCCACTCGACCCAATGGCGGACCTGGGCAGCTTGTTTCATTCAAGCCGCTTGGTTTAGCTACAAGAAACGGAAAGAGGCGGCGGCGGCCGCCGAGGTCGAGAAGGAGATTGTTGTTAGGAATTATGTGGTGAATTGTAGGAGGGTTGGTGGTGGCGACGGCGGCCGGAGTAGGCGGTGTTGCAACAGTGGGGAGATTAATGCGGTTCATGGCCGGTCGTTGTTGAAGCCGGTTGAACCGGACTTCTCAATCGAAGAGAGATAA 2034 48.67 MSSSNSRRWRSATVRFQDEELENGGAERKEWERGKLKEVGEMSRVFSEDYDVVDRRVLDPRLPILNRWKRVFLVACLVSLFVDPVFFFLPVVRVEEGCVEMSRGLGATLTVVRSMADVFYVMQIVVRFMTAYVAPSSRIFGRGDLVIDPSKIAANYLLFDFWLHFAAALPLPQAFIWAAIPNIRGSNMTSWSYILRFSILFQYFLRLYLIFPLSDQIIQATGVLMKTAWAGAVYNLMLFMLASHVLGSSWYLLSVGRQMECWKRVCSLGQLDCQYEFFDCKVVGNPSRAAWFEATNISNLCHPTSTTFFHFGIFSDSFVSTSSTFFNRYFYCFWWGLRNLSSLGQNLLTSSNVGEISFAIVIAIVGLVLFALLIGNMQTYLQSTTLRLEEWRVRRTDTEQWMQHRQLPYELKQSVRKYDQFRWIATRGVDEEHILKGLPLDLRRDIKRHLCLDLVRQVPLFDEMEERMLEAICERLRPCLSTSNTCLIREGDPVNEMLFIIRGHLDSHTTNGGRTGFFNSTRLGPSDFCGEELLPWALDPRATAAVLPSSTRTVRAITEVEAFALIAHDLKFVAAQFRRLHSKQVRATFRFHSTQWRTWAACFIQAAWFSYKKRKEAAAAAEVEKEIVVRNYVVNCRRVGGGDGGRSRRCCNSGEINAVHGRSLLKPVEPDFSIEER 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4168233 4174286 + Sed0020712.1 Sed14g0403 736121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0403 677 Pfam Ion transport protein 70 387 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0403 677 SUPERFAMILY Voltage-gated potassium channels 66 382 - -
Sed14g0403 677 Gene3D - 78 384 - -
Sed14g0403 677 Gene3D Helix hairpin bin 388 451 - -
Sed14g0403 677 FunFam Cyclic nucleotide-gated ion channel 1 458 577 - -
Sed14g0403 677 SMART cnmp_10 460 592 IPR000595 -
Sed14g0403 677 ProSiteProfiles cAMP/cGMP binding motif profile. 460 546 IPR000595 -
Sed14g0403 677 PRINTS EAG/ELK/ERG potassium channel family signature 241 251 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed14g0403 677 PRINTS EAG/ELK/ERG potassium channel family signature 355 366 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed14g0403 677 PRINTS EAG/ELK/ERG potassium channel family signature 124 133 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed14g0403 677 PRINTS EAG/ELK/ERG potassium channel family signature 373 382 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed14g0403 677 PRINTS EAG/ELK/ERG potassium channel family signature 329 346 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed14g0403 677 PRINTS EAG/ELK/ERG potassium channel family signature 423 430 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed14g0403 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 38 625 - -
Sed14g0403 677 FunFam Cyclic nucleotide-gated ion channel 1 387 451 - -
Sed14g0403 677 Gene3D Jelly Rolls 458 579 IPR014710 -
Sed14g0403 677 SUPERFAMILY cAMP-binding domain-like 390 580 IPR018490 -
Sed14g0403 677 CDD CAP_ED 460 592 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2842 Sed-Chr5:39547368 Sed14g0403 Sed-Chr14:4168233 7.80E-229 dispersed
Sed13g2104 Sed-Chr13:25724430 Sed14g0403 Sed-Chr14:4168233 1.40E-183 dispersed
Sed13g2105 Sed-Chr13:25724430 Sed14g0403 Sed-Chr14:4168233 1.40E-183 dispersed
Sed14g0403 Sed-Chr14:4168233 Sed05g2841 Sed-Chr5:39547040 1.20E-229 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0403 K05391 - csv:101221856 917.146