Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0406 ATGATTACGTTTATGGATTCGAAGGAGAAATTGAAGGAGATGGAGAAATGTTTAGATCCTCAGCTATGGCATGCTTGTGCGGGAGGAATGGTTCAAATGCCGGTTGTAAACGCTAGGGTTTTCTATTTCCCACAAGGCCATGCGGAACATGCTTGTGGGCTTGTTGATTTTACTAAATGTTCTAAAGTTCCTCCATACACACTTTGTAGGGTTTTTTCTATTAAGTTTTTGGCTGATTCTGACACTGATGAGGTTTTTGCTAAGCTTAGGTTGATTCCCATGAATGGAAATGAGGTTGATTTTGAAGAGGATGGAATTCGTAAGCTTAATGGGTGTGATCAGGATAAGCCGTCTTCGTTTGCGAAGACATTGACTCAATCTGATGCTAACAATGGTGGGGGGTTTTCTGTTCCTAGGTATTGTGCTGAAACTATCTTCCCTCGGTTGGATTACTCTGCGGATCCGCCGGTTCAGACCATTCTTGTTAAGGATGTTCATGGTGAGACGTGGAAGTTTAGGCACATTTACCGCGGGACTCCTCGGCGGCATCTTTTGACGACGGGGTGGAGTACTTTTGTTAACCATAAGAAGCTTGTTGCTGGTGATTCTATTGTTTTCTTGAGGGCGGAGAATGGAGATCTCTGCGTAGGGATTCGGCGCGCGAAGAGGGGGATTGGAGATGGATTGGAGTCGTCGTCGTCGTGTGGATGGAATCCGGCGGGTGGGAATTGTGGTGTACCTTATGGAGCGTTGTCGGCATTTTTGAGGGAGGATGAGAATCGATTTGCGAGGTCAGCGAATGGATTGAATGGAAATGGAAGTCCTATGGTGAAGGGGAAAGTGAAGGCTGAATCTGTTATTGAAGCTGCTACACTTGCTGCTAATGGGCAGCCCTTTGAAATTGTCTACTATCCAAGAGCTAGTACCCCTGAGTTCTGTGTCAAGGCAGGATTGGTGAAAGCGGCATTGCAGATCCGGTGGTGCTCGGGTATGAGGTTCAAGATGCCCTTCGAAACTGAGGACTCTTCACGGATAAGCTGGTTCATGGGTACCATCAACTCGGTTCAGGTTGCTGACCCGCTGCGATGGCCTGAATCACCATGGAGGCTTCTTCAGGTTACTTGGGATGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCGTGGTTGGTCGAATTGGTATCGAACATGTCTCCTATTCACCTTGCCCCCTTCTCGCCTCCGAGGAAAAAGTTCAGATATCCACAACACCCTGATTTCCCCCTCGATAACCAGGCTTCTATGTCGTCGTGCTCTAGTTATCTCCATGGGCCCGGCAGCCCTTTCGGTTGTCCTCCTGACAACAACTCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTCCATCTCAGTAAACTGCAGTCAGGTCTGTTTCCGATTGGTTATCGATCACGGGATCCAGCTTCTGGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAACCAAGTATGAGTGAAAACGTATCGTGCTTGCTAACCATGGCACATTCTACTCAACCGTCAAAAAAATTCGACGATGTAAAGACTCCCCAGCTAATACTCTTTGGCCGACCCATACTTACCGAATTGCAGATGTCTCAAAGTTGTTCTGGCGATACGGTTTCCCCCGTCCGTACTGGAAATAGTTCATCAGATGGAAATGGAGATAAAATGGCAAACAACTCTGATGGATCTGGATCTGCTCTTCATCAACAAGGCATAGAACGCTCGTCCTCCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGACGTCGTCGACCCTAACTTGGAGACCGGCCACTGTAAAGTCTTTATGGAATCGGAAGACGTAGGTCGCACCCTTGATCTTACTTTACTCGGGTCTTACGAAGAACTGTACAGAAAACTCAGAAATATGTTCGGTATAGACAATTCAGAGACATTGAACCAAGTCTTGTACCGCGATGTTTCCGGAGCTGTCAAGCACGTCGGCGACGAACAATTCAGCGAGTTCATCAAAACAGCAAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCATAG 2103 46.74 MITFMDSKEKLKEMEKCLDPQLWHACAGGMVQMPVVNARVFYFPQGHAEHACGLVDFTKCSKVPPYTLCRVFSIKFLADSDTDEVFAKLRLIPMNGNEVDFEEDGIRKLNGCDQDKPSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILVKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGLESSSSCGWNPAGGNCGVPYGALSAFLREDENRFARSANGLNGNGSPMVKGKVKAESVIEAATLAANGQPFEIVYYPRASTPEFCVKAGLVKAALQIRWCSGMRFKMPFETEDSSRISWFMGTINSVQVADPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKFRYPQHPDFPLDNQASMSSCSSYLHGPGSPFGCPPDNNSAGMQGARHAHFGLSLSDFHLSKLQSGLFPIGYRSRDPASGSTRLSGNAMTEKPSMSENVSCLLTMAHSTQPSKKFDDVKTPQLILFGRPILTELQMSQSCSGDTVSPVRTGNSSSDGNGDKMANNSDGSGSALHQQGIERSSSENFQWYKDNRQDVVDPNLETGHCKVFMESEDVGRTLDLTLLGSYEELYRKLRNMFGIDNSETLNQVLYRDVSGAVKHVGDEQFSEFIKTARRLTILTDSGSNNVGA 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4240115 4243510 + Sed0021582.1 Sed14g0406 736124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0406 700 Gene3D - 612 698 - -
Sed14g0406 700 SMART B3_2 120 222 IPR003340 GO:0003677(InterPro)
Sed14g0406 700 Gene3D - 326 400 - -
Sed14g0406 700 ProSiteProfiles PB1 domain profile. 614 694 IPR053793 -
Sed14g0406 700 Pfam Auxin response factor 289 372 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed14g0406 700 SUPERFAMILY DNA-binding pseudobarrel domain 115 222 IPR015300 -
Sed14g0406 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 696 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed14g0406 700 Gene3D - 118 222 IPR015300 -
Sed14g0406 700 CDD B3_DNA 119 220 IPR003340 GO:0003677(InterPro)
Sed14g0406 700 FunFam Auxin response factor 118 222 - -
Sed14g0406 700 FunFam Auxin response factor 327 400 - -
Sed14g0406 700 MobiDBLite consensus disorder prediction 548 588 - -
Sed14g0406 700 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677(InterPro)
Sed14g0406 700 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0699 Sed-Chr3:4199364 Sed14g0406 Sed-Chr14:4240115 2.50E-175 dispersed
Sed04g0120 Sed-Chr4:751296 Sed14g0406 Sed-Chr14:4240115 2.30E-90 dispersed
Sed14g0406 Sed-Chr14:4240115 Sed14g1598 Sed-Chr14:24132416 6.30E-69 dispersed
Sed01g2849 Sed-Chr1:23945631 Sed14g0406 Sed-Chr14:4240115 5.50E-211 wgd
Sed14g0406 Sed-Chr14:4240115 Sed05g2845 Sed-Chr5:39588931 1.30E-244 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40544 PF02362 B3 5.00E-22 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0406 K14486 - csv:101217039 1265.37