Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0413 ATGGCGGCCACCAAGGATTACCAAGACCCGCCGCCGGCGCCGTTGATCGACGGCGGCGAGTTGACTCAGTGGTCGTTTTACCGAGCCATTATCGCCGAGTTCGTCGCAACGCTCCTGTTCTTGTACATTCTGGTTCTCACCGTCATCGGCAATGCCAGAAATTCCGTCGCCGTGAACGGCGGCGCTGAGTGCGGCGGCGTCGGATTTTTGGGTATTTCTTGGGCCGTCGGCGGCATGATCTTTGTTCTTGTTTACTGTACCGCCGGTATCTCTGGAGGGCATATTAATCCGGCAGTGACATTTGGGCTGTTCTTGGCTCGAAAAATCTCCCTAATCCGAGCTGTGTTTTACATTGCGGCTCAATGTTTAGGCGCCATTTGTGGGTGTGGGTTAGCTAAATCATTTCAGAAAGCCTTTTACGTTCGTTACCATGGTGGAACCAACATGCTCTCTACTGACTACAGCATCCTCACCGGCTTAGCCGCCGAGATCGTCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGATCCCAAGCGAAACGCTAGAGATTCTCACGTCCCCGTTTTGGCGCCACTCCCGATCGGGTTTGCAGTGTTTATGGTTCATTTAGCTACCATCCCGATCACCGGCACCGGCATCAACCCGGCTCGAAGCTTAGGAGCTGCAGTGATCTATAACAAACCTGAAGGCTGGGATCATCACTGGATATTTTGGGTTGGGCCCTTTGTTGGAGCTGCAATTGCTGCAATTTATCATCAAATCATAATAAGGGCAGGCGCAGTTAAAGCTATTGGATCGTTTAGAAGTTCATCTGCAGTATAA 831 51.62 MAATKDYQDPPPAPLIDGGELTQWSFYRAIIAEFVATLLFLYILVLTVIGNARNSVAVNGGAECGGVGFLGISWAVGGMIFVLVYCTAGISGGHINPAVTFGLFLARKISLIRAVFYIAAQCLGAICGCGLAKSFQKAFYVRYHGGTNMLSTDYSILTGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKPEGWDHHWIFWVGPFVGAAIAAIYHQIIIRAGAVKAIGSFRSSSAV 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4282412 4285186 - Sed0016328.1 Sed14g0413 736131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0413 276 Gene3D Glycerol uptake facilitator protein. 13 276 IPR023271 -
Sed14g0413 276 Pfam Major intrinsic protein 20 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0413 276 SUPERFAMILY Aquaporin-like 21 260 IPR023271 -
Sed14g0413 276 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Sed14g0413 276 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 272 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Sed14g0413 276 CDD MIP 28 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0413 276 FunFam Probable aquaporin PIP1-2 13 274 - -
Sed14g0413 276 PRINTS Major intrinsic protein family signature 28 47 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0413 276 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0413 276 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0413 276 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0413 276 PRINTS Major intrinsic protein family signature 198 220 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0413 276 PRINTS Major intrinsic protein family signature 238 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0413 276 NCBIfam MIP family channel protein 32 254 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g0413 Sed-Chr14:4282412 Sed14g0415 Sed-Chr14:4313852 2.80E-121 dispersed
Sed14g0413 Sed-Chr14:4282412 Sed14g0414 Sed-Chr14:4291788 5.20E-120 tandem
Sed01g2833 Sed-Chr1:23648384 Sed14g0413 Sed-Chr14:4282412 1.90E-117 wgd
Sed14g0413 Sed-Chr14:4282412 Sed02g0654 Sed-Chr2:44341508 2.70E-108 wgd
Sed14g0413 Sed-Chr14:4282412 Sed03g2005 Sed-Chr3:13940345 8.90E-120 wgd
Sed14g0413 Sed-Chr14:4282412 Sed05g2850 Sed-Chr5:39649883 6.80E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0413 K09872 - csv:101215604 454.907