Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0414 ATGGGTAAGGATCTTGAGTCCGGAGAGCGGGGCGGGTTCGGTGGCAAGGACTACCTGGACCCGCCCCCTGCCCCGTTGATCGACGGGGAGGAGTTCGGGCAGTGGTCGCTTTATAGGGCCGTCATTGCCGAGTTCGTTGCTACGCTTTTGTTCTTGTATGTCACTGTTCTCACTGTCATTGGGTATAAGGTTCAGAGCGATGTCGGTAACGGCGGCGACATTTGCGGCGGCGTTGGCATTTTGGGCATTGCTTGGGCGTTTGGTGGCATGATTTTTGTTCTTGTTTACTGCACTGCCGGCATCTCCGGTGGGCATATCAATCCAGCGGTCACATTTGGGCTGTTCCTGGCAAGGAAGGTTTCCTTGGTGAGAGCCATATTATACATTGTGGCTCAAAGTTTGGGCGCCATTTGTGGCTGTGCATTGGTGAAGGCATTCCAAAACGCTCACTACAACGAGTACGGCGGCGGAGCCAATTCCCTTGCCAAAGGCTACAGCACCGGCACCGGACTGGCCGCCGAGATCATCGGAACCTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGACCCCAAGAGAAATGCCCGAGATTCTCACGTTCCTGTTTTGGCGCCACTTCCAATCGGGTTTGCCGTGTTCATGGTTCACTTAGCCACAATCCCGATCACCGGCACCGGCATCAACCCGGCTCGAAGCTTTGGAGCTGCAGTTGTGTTCAACAAATCCAAGCCATGGGATGATCAATGGATTTTTTGGGTTGGACCTTTCATTGGAGCTGCAATTGCTGCAATTTATCACCAATTTGTATTAAGAGCTGGAGCAGCTAAAGCTCTTGGATCATTTGCAAGCTCCTAA 855 52.98 MGKDLESGERGGFGGKDYLDPPPAPLIDGEEFGQWSLYRAVIAEFVATLLFLYVTVLTVIGYKVQSDVGNGGDICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQSLGAICGCALVKAFQNAHYNEYGGGANSLAKGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQWIFWVGPFIGAAIAAIYHQFVLRAGAAKALGSFASS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4291788 4294689 - Sed0018960.1 Sed14g0414 736132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0414 284 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Sed14g0414 284 SUPERFAMILY Aquaporin-like 34 271 IPR023271 -
Sed14g0414 284 FunFam Probable aquaporin PIP1-2 24 284 - -
Sed14g0414 284 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0414 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0414 284 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0414 284 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0414 284 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0414 284 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0414 284 MobiDBLite consensus disorder prediction 1 22 - -
Sed14g0414 284 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0414 284 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0414 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Sed14g0414 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 15 281 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Sed14g0414 284 Pfam Major intrinsic protein 33 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2006 Sed-Chr3:13955229 Sed14g0414 Sed-Chr14:4291788 3.50E-143 dispersed
Sed14g0414 Sed-Chr14:4291788 Sed14g0418 Sed-Chr14:4333918 3.90E-110 dispersed
Sed14g0413 Sed-Chr14:4282412 Sed14g0414 Sed-Chr14:4291788 5.20E-120 tandem
Sed14g0414 Sed-Chr14:4291788 Sed14g0415 Sed-Chr14:4313852 3.10E-136 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0414 K09872 - csv:101216085 518.85