Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0414 | ATGGGTAAGGATCTTGAGTCCGGAGAGCGGGGCGGGTTCGGTGGCAAGGACTACCTGGACCCGCCCCCTGCCCCGTTGATCGACGGGGAGGAGTTCGGGCAGTGGTCGCTTTATAGGGCCGTCATTGCCGAGTTCGTTGCTACGCTTTTGTTCTTGTATGTCACTGTTCTCACTGTCATTGGGTATAAGGTTCAGAGCGATGTCGGTAACGGCGGCGACATTTGCGGCGGCGTTGGCATTTTGGGCATTGCTTGGGCGTTTGGTGGCATGATTTTTGTTCTTGTTTACTGCACTGCCGGCATCTCCGGTGGGCATATCAATCCAGCGGTCACATTTGGGCTGTTCCTGGCAAGGAAGGTTTCCTTGGTGAGAGCCATATTATACATTGTGGCTCAAAGTTTGGGCGCCATTTGTGGCTGTGCATTGGTGAAGGCATTCCAAAACGCTCACTACAACGAGTACGGCGGCGGAGCCAATTCCCTTGCCAAAGGCTACAGCACCGGCACCGGACTGGCCGCCGAGATCATCGGAACCTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGACCCCAAGAGAAATGCCCGAGATTCTCACGTTCCTGTTTTGGCGCCACTTCCAATCGGGTTTGCCGTGTTCATGGTTCACTTAGCCACAATCCCGATCACCGGCACCGGCATCAACCCGGCTCGAAGCTTTGGAGCTGCAGTTGTGTTCAACAAATCCAAGCCATGGGATGATCAATGGATTTTTTGGGTTGGACCTTTCATTGGAGCTGCAATTGCTGCAATTTATCACCAATTTGTATTAAGAGCTGGAGCAGCTAAAGCTCTTGGATCATTTGCAAGCTCCTAA | 855 | 52.98 | MGKDLESGERGGFGGKDYLDPPPAPLIDGEEFGQWSLYRAVIAEFVATLLFLYVTVLTVIGYKVQSDVGNGGDICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQSLGAICGCALVKAFQNAHYNEYGGGANSLAKGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQWIFWVGPFIGAAIAAIYHQFVLRAGAAKALGSFASS | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 4291788 | 4294689 | - | Sed0018960.1 | Sed14g0414 | 736132 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0414 | 284 | ProSitePatterns | MIP family signature. | 105 | 113 | IPR022357 | - | |
Sed14g0414 | 284 | SUPERFAMILY | Aquaporin-like | 34 | 271 | IPR023271 | - | |
Sed14g0414 | 284 | FunFam | Probable aquaporin PIP1-2 | 24 | 284 | - | - | |
Sed14g0414 | 284 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed14g0414 | 284 | PRINTS | Major intrinsic protein family signature | 39 | 58 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed14g0414 | 284 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed14g0414 | 284 | PRINTS | Major intrinsic protein family signature | 209 | 231 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed14g0414 | 284 | PRINTS | Major intrinsic protein family signature | 249 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed14g0414 | 284 | PRINTS | Major intrinsic protein family signature | 173 | 191 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed14g0414 | 284 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Sed14g0414 | 284 | NCBIfam | MIP family channel protein | 43 | 265 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed14g0414 | 284 | CDD | MIP | 39 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed14g0414 | 284 | Gene3D | Glycerol uptake facilitator protein. | 24 | 284 | IPR023271 | - | |
Sed14g0414 | 284 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 15 | 281 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
Sed14g0414 | 284 | Pfam | Major intrinsic protein | 33 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2006 | Sed-Chr3:13955229 | Sed14g0414 | Sed-Chr14:4291788 | 3.50E-143 | dispersed | |
Sed14g0414 | Sed-Chr14:4291788 | Sed14g0418 | Sed-Chr14:4333918 | 3.90E-110 | dispersed | |
Sed14g0413 | Sed-Chr14:4282412 | Sed14g0414 | Sed-Chr14:4291788 | 5.20E-120 | tandem | |
Sed14g0414 | Sed-Chr14:4291788 | Sed14g0415 | Sed-Chr14:4313852 | 3.10E-136 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0414 | K09872 | - | csv:101216085 | 518.85 |