Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0418 ATGTCTAAAGATGTTGAAACCAGCGGCGCCGGTGTCCGGTTCTCCGCCGGCGAATACCTCGACGATCCTCCGGCTCCCTTGTTCGACGGCGGCGAGCTTCTGCGGTGGTCGTTTTACAGGGCAGTCATTGCCGAGTTCGTTGCCACGCTTTTGTTTCTCTACGTCGGAGTTCTGACTGTGATCGGTAACCAGAGTCAGTCTTCCGCCGCCGTGTGCGGCGGCGTTGGCGTTCTCGGCATTGCTTGGGCGTTTGGTGGCACCATTTTTGTTCTCGTCTACTGTACCGCCGGCATTTCTGGAGGACACATAAATCCAGCAGTGACATTTGGGCTGTTTTTGGGTCGCAAAGTTTCATTGGTGAGAGCTGTGCTATACATTGTGGCTCAGTGTTTGGGGGCCATTTGTGGGTGTGGGTTGGTCAAGTTATTAAAGAAGGTTAACTTCAACGCCTTTAGCCCCGGTGCAGGCCTCGCTGCCGAGATCATCGGGACCTTCCTTCTTGTTTACACTGTCTTCTCCGCTACCGATCCTAAAAGAAAAGCTAGAGATTCTCATGTTCCTGTTTTAGCGCCACTCCCAATTGGGTTCGCCGTGTTCGTGGTGAATTTGGCGACGATTCCGGTGACCGGCGCCGGTATTAACCCAGCTCGAAGCTTTGGCTCTGCAGTCATGTTCAACAATCACAAAGCTTGGGATAACCATTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTATTTTGAGAGGAGGAGCAGCTAAGACCTTTAGATCCTTCAAGAATTCTTCAATTTAA 819 50.92 MSKDVETSGAGVRFSAGEYLDDPPAPLFDGGELLRWSFYRAVIAEFVATLLFLYVGVLTVIGNQSQSSAAVCGGVGVLGIAWAFGGTIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLVRAVLYIVAQCLGAICGCGLVKLLKKVNFNAFSPGAGLAAEIIGTFLLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNHKAWDNHWIFWVGPFIGAAMAAIYHEFILRGGAAKTFRSFKNSSI 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4333918 4336810 + Sed0010892.1 Sed14g0418 736136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0418 272 Pfam Major intrinsic protein 33 252 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0418 272 SUPERFAMILY Aquaporin-like 33 257 IPR023271 -
Sed14g0418 272 CDD MIP 40 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0418 272 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0418 272 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0418 272 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0418 272 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0418 272 PRINTS Major intrinsic protein family signature 235 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0418 272 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0418 272 FunFam Probable aquaporin PIP2-8 25 272 - -
Sed14g0418 272 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 12 268 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Sed14g0418 272 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Sed14g0418 272 NCBIfam MIP family channel protein 44 251 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g0418 272 Gene3D Glycerol uptake facilitator protein. 25 272 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0227 Sed-Chr1:1798555 Sed14g0418 Sed-Chr14:4333918 4.60E-14 dispersed
Sed09g1598 Sed-Chr9:39474023 Sed14g0418 Sed-Chr14:4333918 2.30E-34 dispersed
Sed14g0365 Sed-Chr14:3816260 Sed14g0418 Sed-Chr14:4333918 3.00E-34 dispersed
Sed14g0414 Sed-Chr14:4291788 Sed14g0418 Sed-Chr14:4333918 3.90E-110 dispersed
Sed14g0415 Sed-Chr14:4313852 Sed14g0418 Sed-Chr14:4333918 4.40E-106 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0418 K09872 - csv:101215842 479.559