Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0480 ATGACGATGGAGCGCAAGAGGACGATGACGATGAACTGGGACGGGCTTCGCGACGACGACGACGACGACCGGTTCTTCGAGTCCGTCGGAAGAAGATCCTCCGCCATGCCGGAGGATTTAGCTTCCAGTTCCGACGACGACGACTTCGAAGACAGCCGGATGTCCTTCGCCTCCGTCGTCTCCACCCGAAAGCACGAAGAGTTCCGCGCCTTCGCCGTGGCTTCGCCGATGACGCCGGAGTACGACATCTGGATGGCCGCACCAGGATCCATCAACGCGCGTCGCAAGCGGTTGCTCGAAGGAATGGGCCTCAACAGCGGCAAACAGTTCCAGCGCGAGATTTCCAAGAAAATCGAGAATATCTTCCAGAGCAAGGAGATTCAACCTGAGGTGTCCAAGAAAATCGAGACTAATGTCCAGATTTCTCAACCGGAAACCACCACCACCACCACCGTCGAAACTCCTGAGAAAGTGGATTCGAAGCAAGAACCATCTCCATCGTCACCGTCACCGTCACCGCCACCGCCACCGCCATTGCCGATCTTGCTCGTCCGCTCGAGATCCGACGGAGATATCGATGCATTCTCGATTTCCAAATCACGAAAAGACGACCTAATCGGAAACGTCTCAAAGCAACGCCTAACGAGAACTTACTCGATGATAACGGCGCCGAGTCCTCGTATGTGCAACTATCCAGATTCAATCAGAGTTTCGTCGAACGAATGCGGTCAATCGATCCGGAACGGAGCGACATTGTCGACCGTGATCTCGAACAGGTTAGGCGCGTTTGTTCTAATCAAGAATCTCGATACAGGAAAGGAGTTCGTCGTGAAAGGATCCGATCAAGAAGGAATGTGGAACCGCCTCAGCGATCTGGAAACCGGAAAGCAGCTTACGATGGAGGAATTCGAGAAATGCGTCGGATACTCACCGGTGGTGAAGGAAATGATGCAAAGAGAAAACGGATCTCGAACGAACGCGTTGAAGAACATCAACGTGAATTCGTTTATGTCGAAGAGCTTACGAATGAGCAAGAGAAGAGGAGCGACGCTGTTGAAGAACATCAAAGGATCGATGACAGGAATCATGGGAGAAAAAGAAATGTCTCTGGCATCGCTTGAGACAAAGCCTAGCAAGAACGCGTCGTCGTCGGCGGCGACTGCAACGCCGCCGCCTACGGCGTCAGAGCAGTGGGTAAAAGTGAGACAGAGCGGCAGATCGTACAAGGAGCTTTCGGCGTTGCATTTCTGTCAGGAAATACAGGCGCATGAGGGCTCAATTTGGGCGATGAAATTCAGTCCAGACGCGCGGTTGTTGGCTAGTGCAGGTGAGGATCGAACAATTCATGTATGGGAAGTGCAGGAATGTGAAGTGATGTCGATGAAACCAAACGAAGAAGGGAGTGTTACGCCGATTCATCCTTCGTTTTGTAGCTCGCCTGATAGATCATCTTCATCGCCATCGCCGGCCATTGGAGATGCTTCTCCTTTGCCGTCCGAGAAGAGGAAGAAAGGGAGAGGGGGTTCTGGGAGGAAAGGGAGTGCTATTCCTGATTATGTTCATGTTCCTGAATCTGGCTTTTCGCTTTCGGAAAAACCAGTTACTTCTTTCAATGGCCATCAAGAGGATGTTCTTGATCTCTCTTGGTCTTCTGATTCTCAGCTCCTGCTTTCCTCTTCAATGGACAAAACTGTAAGGCTGTGGGATACGGAAACTAAGAACTGCTTAAAAGTATTTGCTCACAATGATTATGTGACCTGCATACAGTTCAACCCGGTAGATGATAACCATTTTATCAGTGGAGCACTTGATTCAAAGGTGAGGATATGGAATATCCCTGATCGATATGTCGTCGATTGGACTGATCTTCATGAAATGGTCACCGCCGCTTGCTATTCACCCGATGGCCAGGGTGCCATCATAGGTTCACACAAGGGGAGTTGCCGAATGTACACCATAGAGGATTCCAAGTTAGAACAAAAGCACCAGGTTGATGTGCAAAGCAAGAAGTCTAATGGAAAAAAGATCACTGGCTTCCAATTTGTTCCAGGTAGCACTACTGAAGTTCTGGTTACTTCTGCTGATTCTCGAATTCGGATCTTGGATGGCACTGAAGTCACTCAGAGATTCAGAGGTTTCCGAAACACAAGCAGCCAACTTGCAGGTTCATTCAGCCAAGATGGGAAATATGTGATATGTGCAAGCGAAGATTCTCAAGTTTTTGTATGGAAGAGGGAGGAGGCAAGAAATACAGGTTCTGGAAGGAAAAGTTTGACTGCATACAGAGGCCACGAACACTTCCCTTGTAAAGATGTTTCTATCGCAATCGCATGGCCCGGAACGATTAGTGGCGAACCGCCATTGATCCAAATGGGCTCCAAACGACATTCGAAACGCGCCCAACCGCAAACACCTTCAGCAGGAACCTCACCAACCCAAGACGAAAACACCTCGGTTGCAAATGCTAAGAAAGTACAGTTGCCACCTCTACCAAAGAAAAACAACAATAATGCTGCCGAGAACAACAATGACAACAAGAATAACAATGTGGAGAACAACAATGACAACAAGAATAAAAATGTGGAGAACAACAATGACAACAAGAATAAAAATGTGGAGAACAATAATGACAACAAGAATAGCAGTGCAGAGAACAACAATAACAACAAGAATAGCACTATAGAGAACAATGATGACAACAAGAATAACACTGGGGAGAACAACAAGGATAACAAGAATAACACTGGGGAGAACAACAACGACGACAAGAATAACACTGGAGAGAACAACAACAACGACGACAAGAATAACACTTCAAAGAACAACAACGATGACAAAATTAACACTTCAAAGAACAACGACGACGACAAGAATAACAATGGGGAAAACAACAATGACGACGACAACAATAAGAATAAGTCATCTCCCCCAGATGAAGAGCAGCAACAGCAAGCTCAAGTTGCTCGCTCGGACTCGAAGGCTGGCGACTCGCCTTCCATTTCTTCTGCAGCTGCAATCAGCAACAACTCATCATCTTCGTCCTGGTCTTCCTCATGGTCCTGGCCGTTTGATGTCGGAAACAGCCATGGCCACCATGCTGTCCCAGCTACTGCATGGGGTTTGGTCATTGTCACAGCTGGGTTGGGAGGTGAAATAAGGGTCTATCAAAATTTTGGACTGCCTCGTAGGATCGGACGACAGGCTAATTTCTGGCCAGCCACTTAA 3225 48.16 MTMERKRTMTMNWDGLRDDDDDDRFFESVGRRSSAMPEDLASSSDDDDFEDSRMSFASVVSTRKHEEFRAFAVASPMTPEYDIWMAAPGSINARRKRLLEGMGLNSGKQFQREISKKIENIFQSKEIQPEVSKKIETNVQISQPETTTTTTVETPEKVDSKQEPSPSSPSPSPPPPPPLPILLVRSRSDGDIDAFSISKSRKDDLIGNVSKQRLTRTYSMITAPSPRMCNYPDSIRVSSNECGQSIRNGATLSTVISNRLGAFVLIKNLDTGKEFVVKGSDQEGMWNRLSDLETGKQLTMEEFEKCVGYSPVVKEMMQRENGSRTNALKNINVNSFMSKSLRMSKRRGATLLKNIKGSMTGIMGEKEMSLASLETKPSKNASSSAATATPPPTASEQWVKVRQSGRSYKELSALHFCQEIQAHEGSIWAMKFSPDARLLASAGEDRTIHVWEVQECEVMSMKPNEEGSVTPIHPSFCSSPDRSSSSPSPAIGDASPLPSEKRKKGRGGSGRKGSAIPDYVHVPESGFSLSEKPVTSFNGHQEDVLDLSWSSDSQLLLSSSMDKTVRLWDTETKNCLKVFAHNDYVTCIQFNPVDDNHFISGALDSKVRIWNIPDRYVVDWTDLHEMVTAACYSPDGQGAIIGSHKGSCRMYTIEDSKLEQKHQVDVQSKKSNGKKITGFQFVPGSTTEVLVTSADSRIRILDGTEVTQRFRGFRNTSSQLAGSFSQDGKYVICASEDSQVFVWKREEARNTGSGRKSLTAYRGHEHFPCKDVSIAIAWPGTISGEPPLIQMGSKRHSKRAQPQTPSAGTSPTQDENTSVANAKKVQLPPLPKKNNNNAAENNNDNKNNNVENNNDNKNKNVENNNDNKNKNVENNNDNKNSSAENNNNNKNSTIENNDDNKNNTGENNKDNKNNTGENNNDDKNNTGENNNNDDKNNTSKNNNDDKINTSKNNDDDKNNNGENNNDDDNNKNKSSPPDEEQQQQAQVARSDSKAGDSPSISSAAAISNNSSSSSWSSSWSWPFDVGNSHGHHAVPATAWGLVIVTAGLGGEIRVYQNFGLPRRIGRQANFWPAT 1074
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4774950 4782162 - Sed0015562.1 Sed14g0480 736198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0480 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 461 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 ProSitePatterns Trp-Asp (WD) repeats signature. 556 570 IPR019775 -
Sed14g0480 1074 MobiDBLite consensus disorder prediction 1 29 - -
Sed14g0480 1074 MobiDBLite consensus disorder prediction 373 397 - -
Sed14g0480 1074 Gene3D - 318 485 IPR015943 GO:0005515(InterPro)
Sed14g0480 1074 MobiDBLite consensus disorder prediction 867 946 - -
Sed14g0480 1074 Coils Coil 836 889 - -
Sed14g0480 1074 SUPERFAMILY WD40 repeat-like 417 747 IPR036322 GO:0005515(InterPro)
Sed14g0480 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 578 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 MobiDBLite consensus disorder prediction 371 397 - -
Sed14g0480 1074 MobiDBLite consensus disorder prediction 785 1018 - -
Sed14g0480 1074 Gene3D - 515 778 IPR015943 GO:0005515(InterPro)
Sed14g0480 1074 ProSitePatterns Trp-Asp (WD) repeats signature. 439 453 IPR019775 -
Sed14g0480 1074 SMART WD40_4 530 569 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 SMART WD40_4 662 702 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 SMART WD40_4 413 452 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 SMART WD40_4 572 611 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 SMART WD40_4 613 652 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 SMART WD40_4 703 744 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 PRINTS G protein beta WD-40 repeat signature 439 453 IPR020472 -
Sed14g0480 1074 PRINTS G protein beta WD-40 repeat signature 556 570 IPR020472 -
Sed14g0480 1074 PRINTS G protein beta WD-40 repeat signature 598 612 IPR020472 -
Sed14g0480 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 612 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 MobiDBLite consensus disorder prediction 464 519 - -
Sed14g0480 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 572 - -
Sed14g0480 1074 PANTHER WD REPEAT DOMAIN 44 23 819 IPR040324 -
Sed14g0480 1074 MobiDBLite consensus disorder prediction 166 181 - -
Sed14g0480 1074 MobiDBLite consensus disorder prediction 796 823 - -
Sed14g0480 1074 MobiDBLite consensus disorder prediction 947 975 - -
Sed14g0480 1074 MobiDBLite consensus disorder prediction 471 492 - -
Sed14g0480 1074 MobiDBLite consensus disorder prediction 1 51 - -
Sed14g0480 1074 MobiDBLite consensus disorder prediction 136 181 - -
Sed14g0480 1074 Pfam WD domain, G-beta repeat 532 569 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 Pfam WD domain, G-beta repeat 574 611 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 Pfam WD domain, G-beta repeat 418 451 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 Pfam WD domain, G-beta repeat 721 743 IPR001680 GO:0005515(InterPro)
Sed14g0480 1074 MobiDBLite consensus disorder prediction 976 1018 - -
Sed14g0480 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 578 612 - -
Sed14g0480 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 420 454 - -
Sed14g0480 1074 MobiDBLite consensus disorder prediction 830 860 - -
Sed14g0480 1074 MobiDBLite consensus disorder prediction 136 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0480 K20241 - - csv:101206616 1169.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3170 Sed-Chr4:42451830 Sed14g0480 Sed-Chr14:4774950 7.40E-139 dispersed
Sed04g3171 Sed-Chr4:42451830 Sed14g0480 Sed-Chr14:4774950 2.40E-116 dispersed
Sed14g0480 Sed-Chr14:4774950 Sed14g0783 Sed-Chr14:13197753 2.30E-78 dispersed
Sed14g0480 Sed-Chr14:4774950 Sed03g3006 Sed-Chr3:46870269 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009141 2 0 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33