Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0482 ATGGTTGGAATGGGACAGAAAGATGCTTATGTGGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCACGGAATTGTTAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACCTTCTATAACGAACTTCGTGTCGCTCCGGAAGAACATCCGATTCTCCTCACTGAGGCACCGCTCAATCCCAAAGCTAACCGTGAGAAAATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCGAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAAGGATATGCCTTCCGCACGCTATCCTACGTCTCGATCTTGGTGGCCGTGACCTGA 426 47.89 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAFRTLSYVSILVAVT 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4810504 4811064 + Sed0007339.1 Sed14g0482 736200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0482 141 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Sed14g0482 141 Pfam Actin 7 129 IPR004000 -
Sed14g0482 141 FunFam Actin, alpha skeletal muscle 1 119 - -
Sed14g0482 141 SUPERFAMILY Actin-like ATPase domain 1 110 IPR043129 -
Sed14g0482 141 CDD NBD_sugar-kinase_HSP70_actin 31 126 - -
Sed14g0482 141 PRINTS Actin signature 72 85 IPR004000 -
Sed14g0482 141 PRINTS Actin signature 97 116 IPR004000 -
Sed14g0482 141 PRINTS Actin signature 6 17 IPR004000 -
Sed14g0482 141 PRINTS Actin signature 18 40 IPR004000 -
Sed14g0482 141 PANTHER ACTIN 6 129 IPR004000 GO:0005737(PANTHER)
Sed14g0482 141 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Sed14g0482 141 SMART actin_3 1 140 IPR004000 -
Sed14g0482 141 Gene3D - 2 94 - -
Sed14g0482 141 Gene3D - 95 129 - -
Sed14g0482 141 SUPERFAMILY Actin-like ATPase domain 103 132 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2064 Sed-Chr12:31429881 Sed14g0482 Sed-Chr14:4810504 3.90E-24 dispersed
Sed01g2744 Sed-Chr1:22170118 Sed14g0482 Sed-Chr14:4810504 4.40E-69 wgd
Sed14g0482 Sed-Chr14:4810504 Sed03g3008 Sed-Chr3:46890130 4.30E-70 wgd
Sed14g0482 Sed-Chr14:4810504 Sed03g0086 Sed-Chr3:531191 9.60E-70 wgd
Sed14g0482 Sed-Chr14:4810504 Sed04g2828 Sed-Chr4:40190587 9.60E-70 wgd
Sed14g0482 Sed-Chr14:4810504 Sed07g2481 Sed-Chr7:40527906 9.60E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0482 K10355 - mdm:103427575 262.692