Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0506 | ATGGCGGAGGGTTTTGAAGTGTACCATGTTCCACAACAAAGCCGAAGAGATAAGCTTCGTGTTGGAATTATTGCCAATATTCATCCTTCTTTAATTCCTTCCCATTTCGATTTTCCACAAAACCCTTCTTTTAATTTTCATAACAATCATTTCAATAATTATCCTTCCTCCGCCGTCGCCGCCGTCTCCGCCGCCGACCAACCCTTGTCCCTTGAGCTCAACCTCCAACAACGCTACCCCTCTTCGGCTATTCCTATTTTGAAGGGCTCCAAATTCTTGAACCCGGTTCAGCAGCTCCTCCACGAGCTCTTTGACTTTCCCGACGTGTTGCCGCCGGATTCCGCCGTGTTTGACCCTCTTTTTGAAAGCTTGGGCGGGGATGTCGCCGCCGCCGACGGTGGTGCTGACTGCCGGAGTAATAAGTCTAGGCTTGTTACCATGCTTGATGAGGTTTACAGAAGATACAAGCTTTACTATCAGCAAATGCAAGCCGTGGTTGCAACATTCGAGTACGCCGCAGGGCTTGGCAATGCGGCTCCCTATGTGAACTTAGCCGTAAAAGCCATGTTTAAGCACTTCAGGTTCTTGAAGAACGCCATTGTCGACCAGCTCCAATTCAACAAGCAGCAGCAGCTGCAGCCTTACAACCCGTATTGCCTAAGATCCATTCCCAACAACAATGCCACATTCCTCGACCACCAACCCGTCTGGCGGCCACAGAGGGGCCTCCCGGAGAGCGCCGTCACCATCCTTCGAGCCTGGCTCTTCGAACACTTCCTCCATCCTTATCCGACCGATACTGACAAGCTCATGCTCGCTAACCAAACTGGTCTCTCACGAAGCCAGGTATCAAACTGGTTTATCAATGCAAGGGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATCCACATGTTGGAAACAAAACAAGCTCAGAAATCCCAGCAAAAGGAAACCAATAATGGAAATACCTTAAACAGCATCAACAATCATGTTTCATCCACAAACAAATCATTGAAAGCCGAACACAACATCAACAACAAGAACAATGCATCTTCTTCAAATCACGACCACCACCACCACCAACCACAAGACTTGTCCAACTCCAGCTTCTTCCCGACCAACCACCCTTATGCGGCGGTTGGAACCGCCACAATGGGTGGCGGCGGAAACGTGTCGTTAACACTGGGGCTCCACCAGAACCACGGTGGGATCACTCTTGCGGAGGCGTTTCCGATCAATGTTGCTCCGCCGCATTTTAACCTTGGGTTAGAAGCCAATGGTGAAGGGTTTGTAAATGAGTGGTTTTGA | 1308 | 49.62 | MAEGFEVYHVPQQSRRDKLRVGIIANIHPSLIPSHFDFPQNPSFNFHNNHFNNYPSSAVAAVSAADQPLSLELNLQQRYPSSAIPILKGSKFLNPVQQLLHELFDFPDVLPPDSAVFDPLFESLGGDVAAADGGADCRSNKSRLVTMLDEVYRRYKLYYQQMQAVVATFEYAAGLGNAAPYVNLAVKAMFKHFRFLKNAIVDQLQFNKQQQLQPYNPYCLRSIPNNNATFLDHQPVWRPQRGLPESAVTILRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETKQAQKSQQKETNNGNTLNSINNHVSSTNKSLKAEHNINNKNNASSSNHDHHHHQPQDLSNSSFFPTNHPYAAVGTATMGGGGNVSLTLGLHQNHGGITLAEAFPINVAPPHFNLGLEANGEGFVNEWF | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 5016049 | 5021599 | + | Sed0000129.1 | Sed14g0506 | 736224 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0506 | 435 | MobiDBLite | consensus disorder prediction | 308 | 330 | - | - | |
Sed14g0506 | 435 | MobiDBLite | consensus disorder prediction | 344 | 372 | - | - | |
Sed14g0506 | 435 | Gene3D | - | 240 | 302 | - | - | |
Sed14g0506 | 435 | SMART | HOX_1 | 237 | 301 | IPR001356 | GO:0003677(InterPro) | |
Sed14g0506 | 435 | CDD | homeodomain | 237 | 298 | IPR001356 | GO:0003677(InterPro) | |
Sed14g0506 | 435 | ProSiteProfiles | 'Homeobox' domain profile. | 234 | 297 | IPR001356 | GO:0003677(InterPro) | |
Sed14g0506 | 435 | SUPERFAMILY | Homeodomain-like | 239 | 303 | IPR009057 | - | |
Sed14g0506 | 435 | Pfam | Associated with HOX | 86 | 201 | IPR006563 | - | |
Sed14g0506 | 435 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 67 | 336 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed14g0506 | 435 | SMART | prehox3 | 81 | 202 | IPR006563 | - | |
Sed14g0506 | 435 | FunFam | BEL1-like homeodomain protein 9 | 240 | 302 | - | - | |
Sed14g0506 | 435 | Pfam | Homeobox KN domain | 254 | 293 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0764 | Sed-Chr2:45347735 | Sed14g0506 | Sed-Chr14:5016049 | 1.00E-94 | dispersed | |
Sed04g1226 | Sed-Chr4:25799266 | Sed14g0506 | Sed-Chr14:5016049 | 2.00E-90 | dispersed | |
Sed12g1342 | Sed-Chr12:10289584 | Sed14g0506 | Sed-Chr14:5016049 | 4.40E-43 | dispersed | |
Sed14g0506 | Sed-Chr14:5016049 | Sed14g1325 | Sed-Chr14:22133290 | 4.10E-10 | dispersed | |
Sed14g0506 | Sed-Chr14:5016049 | Sed03g2320 | Sed-Chr3:18239033 | 6.00E-155 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40551 | PF07526 | POX | 1.50E-27 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0506 | - | - | - | 0.0 |