Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0506 ATGGCGGAGGGTTTTGAAGTGTACCATGTTCCACAACAAAGCCGAAGAGATAAGCTTCGTGTTGGAATTATTGCCAATATTCATCCTTCTTTAATTCCTTCCCATTTCGATTTTCCACAAAACCCTTCTTTTAATTTTCATAACAATCATTTCAATAATTATCCTTCCTCCGCCGTCGCCGCCGTCTCCGCCGCCGACCAACCCTTGTCCCTTGAGCTCAACCTCCAACAACGCTACCCCTCTTCGGCTATTCCTATTTTGAAGGGCTCCAAATTCTTGAACCCGGTTCAGCAGCTCCTCCACGAGCTCTTTGACTTTCCCGACGTGTTGCCGCCGGATTCCGCCGTGTTTGACCCTCTTTTTGAAAGCTTGGGCGGGGATGTCGCCGCCGCCGACGGTGGTGCTGACTGCCGGAGTAATAAGTCTAGGCTTGTTACCATGCTTGATGAGGTTTACAGAAGATACAAGCTTTACTATCAGCAAATGCAAGCCGTGGTTGCAACATTCGAGTACGCCGCAGGGCTTGGCAATGCGGCTCCCTATGTGAACTTAGCCGTAAAAGCCATGTTTAAGCACTTCAGGTTCTTGAAGAACGCCATTGTCGACCAGCTCCAATTCAACAAGCAGCAGCAGCTGCAGCCTTACAACCCGTATTGCCTAAGATCCATTCCCAACAACAATGCCACATTCCTCGACCACCAACCCGTCTGGCGGCCACAGAGGGGCCTCCCGGAGAGCGCCGTCACCATCCTTCGAGCCTGGCTCTTCGAACACTTCCTCCATCCTTATCCGACCGATACTGACAAGCTCATGCTCGCTAACCAAACTGGTCTCTCACGAAGCCAGGTATCAAACTGGTTTATCAATGCAAGGGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATCCACATGTTGGAAACAAAACAAGCTCAGAAATCCCAGCAAAAGGAAACCAATAATGGAAATACCTTAAACAGCATCAACAATCATGTTTCATCCACAAACAAATCATTGAAAGCCGAACACAACATCAACAACAAGAACAATGCATCTTCTTCAAATCACGACCACCACCACCACCAACCACAAGACTTGTCCAACTCCAGCTTCTTCCCGACCAACCACCCTTATGCGGCGGTTGGAACCGCCACAATGGGTGGCGGCGGAAACGTGTCGTTAACACTGGGGCTCCACCAGAACCACGGTGGGATCACTCTTGCGGAGGCGTTTCCGATCAATGTTGCTCCGCCGCATTTTAACCTTGGGTTAGAAGCCAATGGTGAAGGGTTTGTAAATGAGTGGTTTTGA 1308 49.62 MAEGFEVYHVPQQSRRDKLRVGIIANIHPSLIPSHFDFPQNPSFNFHNNHFNNYPSSAVAAVSAADQPLSLELNLQQRYPSSAIPILKGSKFLNPVQQLLHELFDFPDVLPPDSAVFDPLFESLGGDVAAADGGADCRSNKSRLVTMLDEVYRRYKLYYQQMQAVVATFEYAAGLGNAAPYVNLAVKAMFKHFRFLKNAIVDQLQFNKQQQLQPYNPYCLRSIPNNNATFLDHQPVWRPQRGLPESAVTILRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETKQAQKSQQKETNNGNTLNSINNHVSSTNKSLKAEHNINNKNNASSSNHDHHHHQPQDLSNSSFFPTNHPYAAVGTATMGGGGNVSLTLGLHQNHGGITLAEAFPINVAPPHFNLGLEANGEGFVNEWF 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5016049 5021599 + Sed0000129.1 Sed14g0506 736224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0506 435 MobiDBLite consensus disorder prediction 308 330 - -
Sed14g0506 435 MobiDBLite consensus disorder prediction 344 372 - -
Sed14g0506 435 Gene3D - 240 302 - -
Sed14g0506 435 SMART HOX_1 237 301 IPR001356 GO:0003677(InterPro)
Sed14g0506 435 CDD homeodomain 237 298 IPR001356 GO:0003677(InterPro)
Sed14g0506 435 ProSiteProfiles 'Homeobox' domain profile. 234 297 IPR001356 GO:0003677(InterPro)
Sed14g0506 435 SUPERFAMILY Homeodomain-like 239 303 IPR009057 -
Sed14g0506 435 Pfam Associated with HOX 86 201 IPR006563 -
Sed14g0506 435 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 67 336 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed14g0506 435 SMART prehox3 81 202 IPR006563 -
Sed14g0506 435 FunFam BEL1-like homeodomain protein 9 240 302 - -
Sed14g0506 435 Pfam Homeobox KN domain 254 293 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0764 Sed-Chr2:45347735 Sed14g0506 Sed-Chr14:5016049 1.00E-94 dispersed
Sed04g1226 Sed-Chr4:25799266 Sed14g0506 Sed-Chr14:5016049 2.00E-90 dispersed
Sed12g1342 Sed-Chr12:10289584 Sed14g0506 Sed-Chr14:5016049 4.40E-43 dispersed
Sed14g0506 Sed-Chr14:5016049 Sed14g1325 Sed-Chr14:22133290 4.10E-10 dispersed
Sed14g0506 Sed-Chr14:5016049 Sed03g2320 Sed-Chr3:18239033 6.00E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40551 PF07526 POX 1.50E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0506 - - - 0.0