Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0533 | ATGGCAGAACCAGACAATCAAGTAATTGATCCCCCTTCATTCTTTCTCTGCCCTATCTCTTTGCAAATCATGAAAGATCCCGTCACGATCGCCTCCGGCATAACCTACAACCGAGAGAGCATTGAGCGATGGTTGTTTTCCGACAAACATACGGCGTGTCCCGTAACGCGGGTGGTCTTGTCGAACTTTGATATCACTCCCAACCATACTCTTCGACGAGTGATTCAAGCTTGGTGCGTCGTCAACGCTCGCTTTGGTGTTGAGAGGATCCCGACACCGAAGCCTCCGGTCGATCAGAAACAAGTCGTCAAGATTCTTGCGGATGCAAAGTTGTCTCCTTTTTCTCAACAGAATTGTCTTCGTCTTCTTCGATCCATCGCGTCGGCGAGCGAGACGAATAAACGTTGCATGGAAGCTGCTGGAGCTGTGGAGTTCTTGGTTGGAGTTGTGTGTAATTCTATCAATGTGGATTCGAGCTTGGAAGATTACACATTTGACGAACAATTAGTAAATTTGGGCGACGAAGCTTTAAGTATTCTTTACAAACTCCAAATCTCAGAATCTGGACTCAAATTACTTCTCTCCAACAATGGCGGCATCTTCATCAAAACCCTAACTAAAATTTTACAAACCGGAACCTACAATTCTCGAGCCTATTCAATCATGCTTCTCCAATCCATGTTCGAATTCGCCAATCAAATTCAAATCACTACCCTAACAGCCGAATTCTTCGTCGAAATCGTCCAAATCTTAAAGGATCAAATCTCAAATCAAGCCTCGAAATCAACATTGAAATTGCTGATCCGACTATGTTCGAGCACGAGAAACCGAGTGAAGGCGATCCAAGCTGGTGCGGTGTCGGTTCTCATCGATCTCCTTCTCGATCTTGATTCGACCGAGAAGCGTTTGATTGAGATGATTCTTGTTGTGCTGGATCTTCTTTGTGGCTGCGCGGACGGCAGGGCGGAGTTGCTCAACCATGCGGCGGGGCTCGCCGTCGTGTCGAAGAAGATTCTACGTGTTTCTTCGCTTGGAAACGAGAAGGCGGTTGGAATTTTGTGGTCGGTTGCGAGATTCTCCGCGAGTGAGATCGTTGTTATGGAAATGGTGCGGATCGGTGTTGTGATGAAGCTGTGTTTTCTGGTTCAGGCAGTCGTCGGCGATGGAGGGAAGGCGAAAGCGAAGGCGAAGGAGATTTTGAAGCTTCATGGTCGGACATGGCGGAATTGTTCTTGTTTGCCTTCGAGTTTAAGATCTTCTTTTCCAATTTAG | 1272 | 46.93 | MAEPDNQVIDPPSFFLCPISLQIMKDPVTIASGITYNRESIERWLFSDKHTACPVTRVVLSNFDITPNHTLRRVIQAWCVVNARFGVERIPTPKPPVDQKQVVKILADAKLSPFSQQNCLRLLRSIASASETNKRCMEAAGAVEFLVGVVCNSINVDSSLEDYTFDEQLVNLGDEALSILYKLQISESGLKLLLSNNGGIFIKTLTKILQTGTYNSRAYSIMLLQSMFEFANQIQITTLTAEFFVEIVQILKDQISNQASKSTLKLLIRLCSSTRNRVKAIQAGAVSVLIDLLLDLDSTEKRLIEMILVVLDLLCGCADGRAELLNHAAGLAVVSKKILRVSSLGNEKAVGILWSVARFSASEIVVMEMVRIGVVMKLCFLVQAVVGDGGKAKAKAKEILKLHGRTWRNCSCLPSSLRSSFPI | 423 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 5329167 | 5331641 | - | Sed0024039.1 | Sed14g0533 | 736251 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0533 | 423 | Gene3D | - | 100 | 404 | IPR011989 | - | |
Sed14g0533 | 423 | SMART | Ubox_2 | 14 | 78 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed14g0533 | 423 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 86 | IPR013083 | - | |
Sed14g0533 | 423 | SUPERFAMILY | RING/U-box | 6 | 86 | - | - | |
Sed14g0533 | 423 | Pfam | U-box domain | 12 | 79 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed14g0533 | 423 | ProSiteProfiles | U-box domain profile. | 10 | 85 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed14g0533 | 423 | SUPERFAMILY | ARM repeat | 102 | 363 | IPR016024 | - | |
Sed14g0533 | 423 | CDD | RING-Ubox_PUB | 12 | 64 | IPR045210 | - | |
Sed14g0533 | 423 | PANTHER | WDSAM1 PROTEIN | 10 | 416 | IPR045185 | GO:0061630(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1559 | Sed-Chr2:51255232 | Sed14g0533 | Sed-Chr14:5329167 | 3.00E-55 | dispersed | |
Sed07g1298 | Sed-Chr7:9748321 | Sed14g0533 | Sed-Chr14:5329167 | 1.80E-42 | dispersed | |
Sed09g0136 | Sed-Chr9:1049822 | Sed14g0533 | Sed-Chr14:5329167 | 9.80E-47 | dispersed | |
Sed12g1341 | Sed-Chr12:10260746 | Sed14g0533 | Sed-Chr14:5329167 | 1.20E-104 | dispersed | |
Sed13g0489 | Sed-Chr13:3337258 | Sed14g0533 | Sed-Chr14:5329167 | 8.80E-50 | dispersed | |
Sed14g0533 | Sed-Chr14:5329167 | Sed14g0585 | Sed-Chr14:5876462 | 2.50E-12 | dispersed | |
Sed14g0533 | Sed-Chr14:5329167 | Sed12g1495 | Sed-Chr12:19913221 | 1.50E-70 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0533 | - | - | - | 0.0 |