Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0533 ATGGCAGAACCAGACAATCAAGTAATTGATCCCCCTTCATTCTTTCTCTGCCCTATCTCTTTGCAAATCATGAAAGATCCCGTCACGATCGCCTCCGGCATAACCTACAACCGAGAGAGCATTGAGCGATGGTTGTTTTCCGACAAACATACGGCGTGTCCCGTAACGCGGGTGGTCTTGTCGAACTTTGATATCACTCCCAACCATACTCTTCGACGAGTGATTCAAGCTTGGTGCGTCGTCAACGCTCGCTTTGGTGTTGAGAGGATCCCGACACCGAAGCCTCCGGTCGATCAGAAACAAGTCGTCAAGATTCTTGCGGATGCAAAGTTGTCTCCTTTTTCTCAACAGAATTGTCTTCGTCTTCTTCGATCCATCGCGTCGGCGAGCGAGACGAATAAACGTTGCATGGAAGCTGCTGGAGCTGTGGAGTTCTTGGTTGGAGTTGTGTGTAATTCTATCAATGTGGATTCGAGCTTGGAAGATTACACATTTGACGAACAATTAGTAAATTTGGGCGACGAAGCTTTAAGTATTCTTTACAAACTCCAAATCTCAGAATCTGGACTCAAATTACTTCTCTCCAACAATGGCGGCATCTTCATCAAAACCCTAACTAAAATTTTACAAACCGGAACCTACAATTCTCGAGCCTATTCAATCATGCTTCTCCAATCCATGTTCGAATTCGCCAATCAAATTCAAATCACTACCCTAACAGCCGAATTCTTCGTCGAAATCGTCCAAATCTTAAAGGATCAAATCTCAAATCAAGCCTCGAAATCAACATTGAAATTGCTGATCCGACTATGTTCGAGCACGAGAAACCGAGTGAAGGCGATCCAAGCTGGTGCGGTGTCGGTTCTCATCGATCTCCTTCTCGATCTTGATTCGACCGAGAAGCGTTTGATTGAGATGATTCTTGTTGTGCTGGATCTTCTTTGTGGCTGCGCGGACGGCAGGGCGGAGTTGCTCAACCATGCGGCGGGGCTCGCCGTCGTGTCGAAGAAGATTCTACGTGTTTCTTCGCTTGGAAACGAGAAGGCGGTTGGAATTTTGTGGTCGGTTGCGAGATTCTCCGCGAGTGAGATCGTTGTTATGGAAATGGTGCGGATCGGTGTTGTGATGAAGCTGTGTTTTCTGGTTCAGGCAGTCGTCGGCGATGGAGGGAAGGCGAAAGCGAAGGCGAAGGAGATTTTGAAGCTTCATGGTCGGACATGGCGGAATTGTTCTTGTTTGCCTTCGAGTTTAAGATCTTCTTTTCCAATTTAG 1272 46.93 MAEPDNQVIDPPSFFLCPISLQIMKDPVTIASGITYNRESIERWLFSDKHTACPVTRVVLSNFDITPNHTLRRVIQAWCVVNARFGVERIPTPKPPVDQKQVVKILADAKLSPFSQQNCLRLLRSIASASETNKRCMEAAGAVEFLVGVVCNSINVDSSLEDYTFDEQLVNLGDEALSILYKLQISESGLKLLLSNNGGIFIKTLTKILQTGTYNSRAYSIMLLQSMFEFANQIQITTLTAEFFVEIVQILKDQISNQASKSTLKLLIRLCSSTRNRVKAIQAGAVSVLIDLLLDLDSTEKRLIEMILVVLDLLCGCADGRAELLNHAAGLAVVSKKILRVSSLGNEKAVGILWSVARFSASEIVVMEMVRIGVVMKLCFLVQAVVGDGGKAKAKAKEILKLHGRTWRNCSCLPSSLRSSFPI 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5329167 5331641 - Sed0024039.1 Sed14g0533 736251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0533 423 Gene3D - 100 404 IPR011989 -
Sed14g0533 423 SMART Ubox_2 14 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed14g0533 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 86 IPR013083 -
Sed14g0533 423 SUPERFAMILY RING/U-box 6 86 - -
Sed14g0533 423 Pfam U-box domain 12 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed14g0533 423 ProSiteProfiles U-box domain profile. 10 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed14g0533 423 SUPERFAMILY ARM repeat 102 363 IPR016024 -
Sed14g0533 423 CDD RING-Ubox_PUB 12 64 IPR045210 -
Sed14g0533 423 PANTHER WDSAM1 PROTEIN 10 416 IPR045185 GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1559 Sed-Chr2:51255232 Sed14g0533 Sed-Chr14:5329167 3.00E-55 dispersed
Sed07g1298 Sed-Chr7:9748321 Sed14g0533 Sed-Chr14:5329167 1.80E-42 dispersed
Sed09g0136 Sed-Chr9:1049822 Sed14g0533 Sed-Chr14:5329167 9.80E-47 dispersed
Sed12g1341 Sed-Chr12:10260746 Sed14g0533 Sed-Chr14:5329167 1.20E-104 dispersed
Sed13g0489 Sed-Chr13:3337258 Sed14g0533 Sed-Chr14:5329167 8.80E-50 dispersed
Sed14g0533 Sed-Chr14:5329167 Sed14g0585 Sed-Chr14:5876462 2.50E-12 dispersed
Sed14g0533 Sed-Chr14:5329167 Sed12g1495 Sed-Chr12:19913221 1.50E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0533 - - - 0.0