Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0538 ATGGAAAAGTACGAGAAGCTCGAAAAGGTGGGCGAAGGAACCTACGGGAAGGTGTACAAAGCCAAAGACAAAGAAAGCGGCCAACTCGTAGCTCTCAAGAAAACCCGCCTGGAAATGGACGAGGAAGGCGTTCCCCCCACCGCCCTCCGCGAGGTCTCCCTCCTCCAATTGCTCTCTCAATCGCTCTACGTCGTCCGCCTCCTCTGCGTCGAACACGTCCACCACCACAAGAGCGCCAAGCCCCTCCTCTACCTCGTTTTCGAGTACCTCGATACCGATCTCAAGAAGTTCATCGACTCCCACCGCAAGGGCCCCGATCCCAGGCCTCTTGCTTCCTCGCTCGTTCGGAGCTTCCTCTTCCAGCTCTGTAAGGGCGTCGCCCACTGCCACGGCCATGGCGTTCTCCATCGCGATCTCAAGCCCCAGAATCTTCTCCTGGATCAGGGGAAAGGCGTGTTGAAGATTGCCGACCTCGGCCTTGGCCGGGCCTTTACTGTGCCGCTTAAGAGCTATACTCATGAGATTGTTACTCTTTGGTACCGTGCTCCTGAGGTTCTCCTTGGATCGACTCATTACTCCACTGCTGTTGATATGTGGTCTGTTGGTTGCATCTTTGCTGAAATGGTGAGAAGGCAGGCATTGTTCCCCGGAGATTCTGAGTTTCAGCAGTTGCTTCACATTTTTAGGCTGCTTGGTACCCCCACCGAGAAGCAGTGGCCTGGAGTTAGTTCTTTGCGGGATTGGCATGTCTATCCTCAATGGGAACCTCAGAATCTGACTCGTGCTGTTCCATCCTTGGAACCCGAGGGCGTTGACCTTCTCACGAAAATGCTTCAATATAATCCGGCAGACAGAATCTCAGCAAAAGCAGCTCTAGACCATCCCTATTTTGACAACCTCGACAAGTCTCAGTATTAA 918 53.49 MEKYEKLEKVGEGTYGKVYKAKDKESGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSAKPLLYLVFEYLDTDLKKFIDSHRKGPDPRPLASSLVRSFLFQLCKGVAHCHGHGVLHRDLKPQNLLLDQGKGVLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEPEGVDLLTKMLQYNPADRISAKAALDHPYFDNLDKSQY 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5418258 5425185 + Sed0005681.1 Sed14g0538 736256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0538 305 PANTHER CELL DIVISION PROTEIN KINASE 3 297 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Sed14g0538 305 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Sed14g0538 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed14g0538 305 SMART serkin_6 4 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0538 305 Pfam Protein kinase domain 4 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0538 305 ProSiteProfiles Protein kinase domain profile. 4 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0538 305 Gene3D Transferase(Phosphotransferase) domain 1 93 305 - -
Sed14g0538 305 FunFam Cyclin-dependent kinase 2 93 304 - -
Sed14g0538 305 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Sed14g0538 305 SUPERFAMILY Protein kinase-like (PK-like) 1 300 IPR011009 -
Sed14g0538 305 FunFam Cyclin-dependent kinase B2,2 1 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2398 Sed-Chr1:18009800 Sed14g0538 Sed-Chr14:5418258 4.10E-121 dispersed
Sed01g2399 Sed-Chr1:18009800 Sed14g0538 Sed-Chr14:5418258 2.00E-109 dispersed
Sed07g2203 Sed-Chr7:37762748 Sed14g0538 Sed-Chr14:5418258 6.20E-95 dispersed
Sed07g2204 Sed-Chr7:37762748 Sed14g0538 Sed-Chr14:5418258 6.20E-95 dispersed
Sed14g0202 Sed-Chr14:2270621 Sed14g0538 Sed-Chr14:5418258 5.40E-59 dispersed
Sed14g0538 Sed-Chr14:5418258 Sed14g0766 Sed-Chr14:8140317 2.20E-50 dispersed
Sed11g1587 Sed-Chr11:31389878 Sed14g0538 Sed-Chr14:5418258 2.90E-11 transposed
Sed14g0538 Sed-Chr14:5418258 Sed03g2289 Sed-Chr3:17393806 1.30E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80149 PF00069 Pkinase 1.00E-65 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0538 K07760 - csv:101204557 591.267