Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0538 | ATGGAAAAGTACGAGAAGCTCGAAAAGGTGGGCGAAGGAACCTACGGGAAGGTGTACAAAGCCAAAGACAAAGAAAGCGGCCAACTCGTAGCTCTCAAGAAAACCCGCCTGGAAATGGACGAGGAAGGCGTTCCCCCCACCGCCCTCCGCGAGGTCTCCCTCCTCCAATTGCTCTCTCAATCGCTCTACGTCGTCCGCCTCCTCTGCGTCGAACACGTCCACCACCACAAGAGCGCCAAGCCCCTCCTCTACCTCGTTTTCGAGTACCTCGATACCGATCTCAAGAAGTTCATCGACTCCCACCGCAAGGGCCCCGATCCCAGGCCTCTTGCTTCCTCGCTCGTTCGGAGCTTCCTCTTCCAGCTCTGTAAGGGCGTCGCCCACTGCCACGGCCATGGCGTTCTCCATCGCGATCTCAAGCCCCAGAATCTTCTCCTGGATCAGGGGAAAGGCGTGTTGAAGATTGCCGACCTCGGCCTTGGCCGGGCCTTTACTGTGCCGCTTAAGAGCTATACTCATGAGATTGTTACTCTTTGGTACCGTGCTCCTGAGGTTCTCCTTGGATCGACTCATTACTCCACTGCTGTTGATATGTGGTCTGTTGGTTGCATCTTTGCTGAAATGGTGAGAAGGCAGGCATTGTTCCCCGGAGATTCTGAGTTTCAGCAGTTGCTTCACATTTTTAGGCTGCTTGGTACCCCCACCGAGAAGCAGTGGCCTGGAGTTAGTTCTTTGCGGGATTGGCATGTCTATCCTCAATGGGAACCTCAGAATCTGACTCGTGCTGTTCCATCCTTGGAACCCGAGGGCGTTGACCTTCTCACGAAAATGCTTCAATATAATCCGGCAGACAGAATCTCAGCAAAAGCAGCTCTAGACCATCCCTATTTTGACAACCTCGACAAGTCTCAGTATTAA | 918 | 53.49 | MEKYEKLEKVGEGTYGKVYKAKDKESGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSAKPLLYLVFEYLDTDLKKFIDSHRKGPDPRPLASSLVRSFLFQLCKGVAHCHGHGVLHRDLKPQNLLLDQGKGVLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEPEGVDLLTKMLQYNPADRISAKAALDHPYFDNLDKSQY | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 5418258 | 5425185 | + | Sed0005681.1 | Sed14g0538 | 736256 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0538 | 305 | PANTHER | CELL DIVISION PROTEIN KINASE | 3 | 297 | IPR050108 | GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER) | |
Sed14g0538 | 305 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 91 | - | - | |
Sed14g0538 | 305 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 134 | 146 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed14g0538 | 305 | SMART | serkin_6 | 4 | 297 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed14g0538 | 305 | Pfam | Protein kinase domain | 4 | 297 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed14g0538 | 305 | ProSiteProfiles | Protein kinase domain profile. | 4 | 297 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed14g0538 | 305 | Gene3D | Transferase(Phosphotransferase) domain 1 | 93 | 305 | - | - | |
Sed14g0538 | 305 | FunFam | Cyclin-dependent kinase 2 | 93 | 304 | - | - | |
Sed14g0538 | 305 | ProSitePatterns | Protein kinases ATP-binding region signature. | 10 | 33 | IPR017441 | GO:0005524(InterPro) | |
Sed14g0538 | 305 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 300 | IPR011009 | - | |
Sed14g0538 | 305 | FunFam | Cyclin-dependent kinase B2,2 | 1 | 91 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2398 | Sed-Chr1:18009800 | Sed14g0538 | Sed-Chr14:5418258 | 4.10E-121 | dispersed | |
Sed01g2399 | Sed-Chr1:18009800 | Sed14g0538 | Sed-Chr14:5418258 | 2.00E-109 | dispersed | |
Sed07g2203 | Sed-Chr7:37762748 | Sed14g0538 | Sed-Chr14:5418258 | 6.20E-95 | dispersed | |
Sed07g2204 | Sed-Chr7:37762748 | Sed14g0538 | Sed-Chr14:5418258 | 6.20E-95 | dispersed | |
Sed14g0202 | Sed-Chr14:2270621 | Sed14g0538 | Sed-Chr14:5418258 | 5.40E-59 | dispersed | |
Sed14g0538 | Sed-Chr14:5418258 | Sed14g0766 | Sed-Chr14:8140317 | 2.20E-50 | dispersed | |
Sed11g1587 | Sed-Chr11:31389878 | Sed14g0538 | Sed-Chr14:5418258 | 2.90E-11 | transposed | |
Sed14g0538 | Sed-Chr14:5418258 | Sed03g2289 | Sed-Chr3:17393806 | 1.30E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80149 | PF00069 | Pkinase | 1.00E-65 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0538 | K07760 | - | csv:101204557 | 591.267 |